SMTL ID : 2iry.1 (1 other biounit)

Crystal Structure of the Polymerase Domain from Mycobacterium tuberculosis Ligase D with dGTP and Manganese.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 3 residues within 4Å: Chain A: D.140, D.142 Ligands: DGT.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.140, A:D.140, H2O.12, H2O.12

1 x DGT: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

DGT.2: 14 residues within 4Å: Chain A: F.67, K.69, H.114, D.140, D.142, S.175, S.177, K.178, G.179, H.181, T.239, I.241, R.247 Ligands: MN.1 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:K.69, A:S.175, A:S.177, A:K.178, A:G.179 Water bridges: A:D.140, A:Q.233, A:T.239, A:R.247, A:R.249 Salt bridges: A:H.181, A:R.247, A:R.247 pi-Stacking: A:F.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pitcher, R.S. et al., Structure and function of a mycobacterial NHEJ DNA repair polymerase. J.Mol.Biol. (2007)

Release Date

2007-01-02

Peptides

DNA ligase-like protein Rv0938/MT0965: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA ligase-like protein Rv0938/MT0965

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