SMTL ID : 4mky.2 (1 other biounit)

Polymerase Domain from Mycobacterium tuberculosis Ligase D in complex with an annealed double-strand DNA break.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x DG- DC- DG: 5'-D(P*DGP*DCP*DGP*DGP*DC)-3'(Non-covalent)

DG-DC-DG.1: 14 residues within 4Å: Chain A: N.16, K.19, K.29, R.56, P.58, F.66, S.74, Q.107, Q.108, A.109 Chain C: C.2, C.3, G.4, C.5 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.66, A:F.66 Hydrogen bonds: A:K.69, A:Q.70, A:T.91 pi-Stacking: A:F.66, A:F.67 DG-DC-DG.2: 15 residues within 4Å: Chain B: T.15, N.16, K.19, K.29, R.56, P.58, F.66, S.74, Q.107, Q.108, A.109 Chain D: C.2, C.3, G.4, C.5 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brissett, N.C. et al., Molecular Basis for DNA Double-Strand Break Annealing and Primer Extension by an NHEJ DNA Polymerase. Cell Rep (2013)

Release Date

2013-12-11

Peptides

DNA ligase-like protein Rv0938/MT0965: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

DNA ligase-like protein Rv0938/MT0965

Related Entries With Identical Sequence