SMTL ID : 2r9l.2 (1 other biounit)

Polymerase Domain from Mycobacterium tuberculosis Ligase D in complex with DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x DG- DC- DG- DG- DC: DNA (5'-D(P*DGP*DCP*DGP*DGP*DC)-3')(Non-covalent)

DG-DC-DG-DG-DC.1: 15 residues within 4Å: Chain A: G.1, C.2, C.3, G.4, C.5 Chain B: N.16, K.19, K.29, R.56, P.58, F.66, S.74, Q.107, Q.108, A.109 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.66 Hydrogen bonds: B:K.69, B:Q.70 pi-Stacking: B:F.66

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain B: Q.233, K.238, T.239 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.239 EDO.3: 6 residues within 4Å: Chain B: K.55, W.57, E.112, R.247, G.248, R.249 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.55, B:K.55, B:R.247, B:G.248

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brissett, N.C. et al., Structure of a NHEJ polymerase-mediated DNA synaptic complex. Science (2007)

Release Date

2008-01-08

Peptides

Putative DNA ligase-like protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
B

Putative DNA ligase-like protein

Related Entries With Identical Sequence