SMTL ID : 2iry.2 (1 other biounit)

Crystal Structure of the Polymerase Domain from Mycobacterium tuberculosis Ligase D with dGTP and Manganese.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 3 residues within 4Å: Chain A: D.140, D.142 Ligands: DGT.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.140, A:D.140, A:D.142, H2O.11, H2O.12

1 x DGT: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

DGT.2: 10 residues within 4Å: Chain A: D.140, D.142, S.175, S.177, K.178, G.179, H.181, I.241, R.247 Ligands: MN.1 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:D.142, A:S.175, A:S.177, A:K.178, A:G.179 Water bridges: A:R.247 Salt bridges: A:H.181, A:R.247, A:R.247

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pitcher, R.S. et al., Structure and function of a mycobacterial NHEJ DNA repair polymerase. J.Mol.Biol. (2007)

Release Date

2007-01-02

Peptides

DNA ligase-like protein Rv0938/MT0965: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

DNA ligase-like protein Rv0938/MT0965

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