SMTL ID : 2ivs.1

Crystal structure of non-phosphorylated RET tyrosine kinase domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

6 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 6 residues within 4Å: Chain A: R.174, L.196, R.198, G.212, R.213, I.214 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.174, A:R.174, A:R.198, A:R.213, A:R.213 FMT.2: 7 residues within 4Å: Chain A: G.34, E.35, F.36, G.37, V.39, K.59, D.193 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.34, A:F.36, A:G.37, A:K.59, A:K.59 Water bridges: A:E.35 FMT.3: 5 residues within 4Å: Chain A: G.34, R.179, N.180, D.193 Ligands: ACK.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.35, A:N.180 FMT.5: 8 residues within 4Å: Chain A: Q.211, L.224, F.225, H.227 Chain B: G.1, P.2, L.3, S.4 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:Q.211, A:H.227, B:G.1, B:L.3, B:S.4 FMT.6: 5 residues within 4Å: Chain B: R.174, L.196, R.198, G.212, R.213 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.174, B:R.174, B:R.198, B:R.213, B:R.213 FMT.7: 6 residues within 4Å: Chain B: G.34, E.35, F.36, G.37, V.39, K.59 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.34, B:E.35, B:F.36, B:G.37, B:G.37, B:K.59

2 x ACK: 2',3'- cyclic AMP(Non-covalent)

ACK.4: 14 residues within 4Å: Chain A: L.31, G.32, E.33, G.34, V.39, A.57, V.105, E.106, Y.107, A.108, G.111, S.112, L.182 Ligands: FMT.3 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.33, A:E.106, A:A.108, A:S.112 Water bridges: A:K.59, A:S.112, A:S.112 ACK.8: 14 residues within 4Å: Chain B: L.31, G.32, E.33, G.34, V.39, A.57, I.89, V.105, E.106, Y.107, A.108, G.111, S.112, L.182 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:E.106, B:A.108, B:S.112 Water bridges: B:K.59, B:K.59, B:Y.110, B:D.193

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Knowles, P.P. et al., Structure and Chemical Inhibition of the Ret Tyrosine Kinase Domain. J.Biol.Chem. (2006)

Release Date

2006-08-14

Peptides

PROTO-ONCOGENE TYROSINE-PROTEIN KINASE RECEPTOR RET: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PROTO-ONCOGENE TYROSINE-PROTEIN KINASE RECEPTOR RET

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