SMTL ID : 2ivt.1

Crystal structure of phosphorylated RET tyrosine kinase domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

4 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 8 residues within 4Å: Chain A: Q.211, L.224, F.225, H.227 Chain B: G.1, P.2, L.3, S.4 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:Q.211, A:H.227, B:G.1, B:L.3, B:S.4 FMT.2: 6 residues within 4Å: Chain A: R.174, L.196, R.198, K.208, G.212, R.213 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.174, A:R.174, A:R.198, A:R.213, A:R.213 FMT.4: 8 residues within 4Å: Chain A: G.1, P.2, L.3, S.4 Chain B: Q.211, L.224, F.225, H.227 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:G.1, A:L.3, A:S.4, B:Q.211, B:H.227 FMT.5: 6 residues within 4Å: Chain B: R.174, L.196, R.198, K.208, G.212, R.213 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.174, B:R.174, B:R.198, B:R.213, B:R.213

2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.3: 16 residues within 4Å: Chain A: L.31, G.32, E.33, G.34, G.37, V.39, A.57, K.59, V.105, E.106, A.108, S.112, R.179, N.180, L.182, D.193 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.34, A:E.106, A:A.108, A:N.180, A:D.193, A:D.193 Salt bridges: A:K.59 AMP.6: 16 residues within 4Å: Chain B: L.31, G.32, E.33, G.34, G.37, V.39, A.57, K.59, V.105, E.106, A.108, S.112, R.179, N.180, L.182, D.193 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:G.34, B:E.106, B:A.108, B:N.180, B:D.193, B:D.193, B:D.193 Salt bridges: B:K.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Knowles, P.P. et al., Structure and chemical inhibition of the RET tyrosine kinase domain. J. Biol. Chem. (2006)

Release Date

2006-08-14

Peptides

PROTO-ONCOGENE TYROSINE-PROTEIN KINASE RECEPTOR RET PRECURSOR: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

PROTO-ONCOGENE TYROSINE-PROTEIN KINASE RECEPTOR RET PRECURSOR

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