SMTL ID : 2x2m.1

Crystal Structure of phosphorylated RET tyrosine kinase domain with inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

5 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 6 residues within 4Å: Chain A: R.174, L.196, K.208, G.212, R.213, I.214 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.174, A:R.174, A:R.198, A:K.208, A:R.213, A:R.213 FMT.2: 8 residues within 4Å: Chain A: G.1, P.2, L.3, S.4 Chain B: Q.211, L.224, F.225, H.227 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:Q.211, B:H.227, A:G.1, A:L.3, A:S.4 FMT.4: 9 residues within 4Å: Chain A: Q.211, L.224, F.225, H.227, F.262 Chain B: G.1, P.2, L.3, S.4 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:Q.211, A:H.227, B:G.1, B:L.3, B:S.4 FMT.5: 7 residues within 4Å: Chain B: R.174, L.196, R.198, K.208, G.212, R.213, I.214 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.174, B:R.174, B:R.213 FMT.6: 7 residues within 4Å: Chain B: R.22, C.95, S.96, D.98, G.99, P.100, L.102 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.98

2 x X2M: (3Z)-3-[(3,5-DIMETHYL-1H-PYRROL-2-YL)METHYLIDENE]-1,3-DIHYDRO-2H-INDOL-2-ONE(Non-covalent)

X2M.3: 13 residues within 4Å: Chain A: L.31, V.39, A.57, K.59, I.89, V.105, E.106, Y.107, A.108, K.109, G.111, L.182, S.192 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.31, A:L.31, A:V.39, A:V.39, A:K.59, A:I.89, A:V.105, A:Y.107, A:L.182, A:L.182 Hydrogen bonds: A:E.106, A:A.108, A:A.108 X2M.7: 13 residues within 4Å: Chain B: L.31, V.39, A.57, I.89, V.105, E.106, Y.107, A.108, K.109, G.111, L.182, S.192, D.193 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:L.31, B:V.39, B:I.89, B:V.105, B:Y.107, B:L.182, B:L.182 Hydrogen bonds: B:E.106, B:A.108, B:A.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mologni, L. et al., Synthesis, structure-activity relationship and crystallographic studies of 3-substituted indolin-2-one RET inhibitors. Bioorg. Med. Chem. (2010)

Release Date

2010-02-09

Peptides

PROTO-ONCOGENE TYROSINE-PROTEIN KINASE RECEPTOR RET: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PROTO-ONCOGENE TYROSINE-PROTEIN KINASE RECEPTOR RET

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