SMTL ID : 2j0s.1

The crystal structure of the Exon Junction Complex at 2.2 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.21 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: T.88, D.186, E.187 Ligands: ANP.2 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.88, H2O.2, H2O.2, H2O.7

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 22 residues within 4Å: Chain A: F.39, Y.55, F.57, K.59, P.60, S.61, Q.64, S.83, G.84, T.85, G.86, K.87, T.88, A.89, E.187, G.339, D.341, P.343, R.366, R.369, Y.370 Ligands: MG.1 31 PLIP interactions: 31 interactions with chain A Hydrogen bonds: A:K.59, A:S.61, A:Q.64, A:G.84, A:T.85, A:T.85, A:G.86, A:K.87, A:K.87, A:K.87, A:T.88, A:A.89, A:G.339, A:D.341, A:R.366, A:R.366, A:R.369, A:R.369 Water bridges: A:Y.55, A:E.58, A:E.58, A:E.187, A:E.187, A:A.218, A:H.362, A:H.362, A:Y.370 Salt bridges: A:R.369 pi-Stacking: A:F.57, A:F.57, A:Y.370

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bono, F. et al., The Crystal Structure of the Exon Junction Complex Reveals How It Mantains a Stable Grip on Mrna. Cell(Cambridge,Mass.) (2006)

Release Date

2006-09-06

Peptides

ATP-DEPENDENT RNA HELICASE DDX48: A
PROTEIN MAGO NASHI HOMOLOG: B
RNA-BINDING PROTEIN 8A: C
PROTEIN CASC3: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
D

E
T

ATP-DEPENDENT RNA HELICASE DDX48

PROTEIN MAGO NASHI HOMOLOG

RNA-BINDING PROTEIN 8A

PROTEIN CASC3

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