SMTL ID : 2xb2.1 (1 other biounit)

Crystal structure of the core Mago-Y14-eIF4AIII-Barentsz-UPF3b assembly shows how the EJC is bridged to the NMD machinery

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain D: T.89, D.187, E.188 Ligands: ANP.2 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:T.89, D:E.188

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 25 residues within 4Å: Chain D: F.40, Y.56, F.58, E.59, K.60, P.61, S.62, Q.65, Q.83, S.84, G.85, T.86, G.87, K.88, T.89, A.90, E.188, A.219, G.340, D.342, P.344, R.367, R.370, Y.371 Ligands: MG.1 23 PLIP interactions: 23 interactions with chain D Hydrogen bonds: D:E.59, D:S.62, D:Q.65, D:Q.65, D:G.85, D:T.86, D:G.87, D:K.88, D:K.88, D:K.88, D:T.89, D:T.89, D:A.90, D:G.340, D:D.342, D:R.367, D:R.367, D:R.370, D:R.370 pi-Stacking: D:F.58, D:F.58, D:Y.371, D:Y.371

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Buchwald, G. et al., Insights Into the Recruitment of the Nmd Machinery from the Crystal Structure of a Core Ejc-Upf3B Complex. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2010-05-12

Peptides

PROTEIN CASC3: B
REGULATOR OF NONSENSE TRANSCRIPTS 3B: C
EUKARYOTIC INITIATION FACTOR 4A-III: D
PROTEIN MAGO NASHI HOMOLOG: E
RNA-BINDING PROTEIN 8A: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
S

C
U

D
X

E
Y

F
Z

PROTEIN CASC3

REGULATOR OF NONSENSE TRANSCRIPTS 3B

EUKARYOTIC INITIATION FACTOR 4A-III

PROTEIN MAGO NASHI HOMOLOG

RNA-BINDING PROTEIN 8A

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