SMTL ID : 2j4i.1

CRYSTAL STRUCTURE OF A HUMAN FACTOR XA INHIBITOR COMPLEX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GSJ: 1-PYRROLIDINEACETAMIDE, 3-[[(6-CHLORO-2-NAPHTHALENYL)SULFONYL]AMINO]-ALPHA-METHYL-N-(1-METHYLETHYL)-N-[2-[(METHYLSULFONYL)AMINO]ETHYL]-2-OXO-, (ALPHAS,3S)-(Non-covalent)

GSJ.1: 18 residues within 4Å: Chain A: K.82, E.83, T.84, Y.85, F.162, D.179, A.180, Q.182, S.185, V.203, S.204, W.205, G.206, G.208, C.209, G.216, I.217, Y.218 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.85, A:F.162, A:F.162, A:V.203, A:W.205, A:W.205 Hydrogen bonds: A:K.82, A:Q.182, A:G.206

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: D.56, N.58, Q.61, E.66 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.56, A:N.58, A:Q.61, A:E.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Young, R.J. et al., Structure- and Property-Based Design of Factor Xa Inhibitors: Pyrrolidin-2-Ones with Acyclic Alanyl Amides as P4 Motifs. Bioorg.Med.Chem.Lett. (2006)

Release Date

2006-09-27

Peptides

COAGULATION FACTOR X: A
COAGULATION FACTOR X: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

COAGULATION FACTOR X

COAGULATION FACTOR X

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