- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.97 Å
- Oligo State
- hetero-oligomer
- Ligands
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 8 x IOD: IODIDE ION(Non-functional Binders)
IOD.3: 2 residues within 4Å:- Chain A: K.123, R.181
Ligand excluded by PLIPIOD.4: 2 residues within 4Å:- Chain A: R.286, L.287
Ligand excluded by PLIPIOD.5: 2 residues within 4Å:- Chain A: S.164, P.165
Ligand excluded by PLIPIOD.6: 1 residues within 4Å:- Chain A: R.191
Ligand excluded by PLIPIOD.7: 1 residues within 4Å:- Chain A: G.18
Ligand excluded by PLIPIOD.12: 3 residues within 4Å:- Chain B: S.26, A.27, R.250
Ligand excluded by PLIPIOD.13: 4 residues within 4Å:- Chain B: W.3, G.4, L.43, K.44
Ligand excluded by PLIPIOD.14: 3 residues within 4Å:- Chain B: K.44, E.45, K.48
Ligand excluded by PLIP- 2 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)
GNP.8: 25 residues within 4Å:- Chain A: L.106, Q.107, G.108, S.109, G.110, K.111, T.112, T.113, K.117, D.135, R.138, Q.144, G.190, K.246, D.248, G.271, V.272, S.273, E.274
- Chain B: N.90, G.91, R.121, L.175
- Ligands: MG.9, GNP.15
24 PLIP interactions:20 interactions with chain A, 4 interactions with chain B- Hydrogen bonds: A:G.108, A:G.110, A:K.111, A:K.111, A:T.112, A:T.112, A:T.113, A:T.113, A:K.117, A:D.135, A:R.138, A:R.138, A:Q.144, A:G.190, A:K.246, A:S.273, B:N.90
- Water bridges: A:T.112, A:R.138, A:E.274, B:N.90, B:G.173, B:G.173
- Salt bridges: A:D.248
GNP.15: 23 residues within 4Å:- Chain A: Q.107, R.138
- Chain B: N.90, G.91, V.92, G.93, K.94, T.95, T.96, K.100, D.118, R.121, Q.127, G.173, T.234, K.235, D.237, G.260, V.261, G.262, E.263
- Ligands: GNP.8, MG.16
28 PLIP interactions:23 interactions with chain B, 5 interactions with chain A- Hydrogen bonds: B:G.91, B:V.92, B:G.93, B:K.94, B:K.94, B:T.95, B:T.96, B:T.96, B:K.100, B:R.121, B:R.121, B:Q.127, B:Q.127, B:G.173, B:K.235, B:G.262
- Water bridges: B:T.95, B:T.95, B:T.96, B:R.121, B:R.121, A:R.138, A:R.138, A:G.190, A:G.190
- Salt bridges: B:D.237, B:E.263, A:R.138
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.9: 2 residues within 4Å:- Chain A: T.112
- Ligands: GNP.8
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:T.112, H2O.73, H2O.84, H2O.100
MG.16: 3 residues within 4Å:- Chain B: T.95, R.121
- Ligands: GNP.15
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:T.95, H2O.199, H2O.206, H2O.224
- 1 x K: POTASSIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gawronski-Salerno, J. et al., Structure of the Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy. J.Struct.Biol. (2007)
- Release Date
- 2006-12-11
- Peptides
- SIGNAL RECOGNITION PARTICLE PROTEIN: A
CELL DIVISION PROTEIN FTSY: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.97 Å
- Oligo State
- hetero-oligomer
- Ligands
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 8 x IOD: IODIDE ION(Non-functional Binders)
- 2 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 1 x K: POTASSIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gawronski-Salerno, J. et al., Structure of the Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy. J.Struct.Biol. (2007)
- Release Date
- 2006-12-11
- Peptides
- SIGNAL RECOGNITION PARTICLE PROTEIN: A
CELL DIVISION PROTEIN FTSY: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
D