- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.39 Å
- Oligo State
- hetero-oligomer
- Ligands
- 2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 3 residues within 4Å:- Chain A: T.112
- Ligands: GDP.1, ALF.3
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:T.112, H2O.53, H2O.82, H2O.117
MG.5: 6 residues within 4Å:- Chain B: T.96, D.119, R.122, D.171
- Ligands: GDP.4, ALF.6
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:T.96, H2O.145, H2O.164, H2O.189
- 2 x ALF: TETRAFLUOROALUMINATE ION(Non-covalent)
ALF.3: 12 residues within 4Å:- Chain A: L.106, Q.107, G.108, K.111, D.135, R.138, T.188, A.189, G.190
- Ligands: GDP.1, MG.2, GDP.4
No protein-ligand interaction detected (PLIP)ALF.6: 11 residues within 4Å:- Chain B: N.91, G.92, K.95, D.119, R.122, T.172, A.173, G.174
- Ligands: GDP.1, GDP.4, MG.5
No protein-ligand interaction detected (PLIP)- 1 x 5GP: GUANOSINE-5'-MONOPHOSPHATE(Non-covalent)
5GP.7: 7 residues within 4Å:- Chain A: E.274, K.275
- Chain B: F.121, A.173, G.174, L.182, E.185
10 PLIP interactions:7 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:G.174, B:E.185, B:E.185, A:E.274
- Water bridges: B:G.174
- pi-Stacking: B:F.121, B:F.121
- pi-Cation interactions: B:F.121
- Salt bridges: A:E.274, A:K.275
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
-
Focia, P.J. et al., Structure of a Gdp:Alf(4) Complex of the Srp Gtpases Ffh and Ftsy, and Identification of a Peripheral Nucleotide Interaction Site. J.Mol.Biol. (2006)
- Release Date
- 2006-10-11
- Peptides
- SIGNAL RECOGNITION PARTICLE PROTEIN: A
CELL DIVISION PROTEIN FTSY: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.39 Å
- Oligo State
- hetero-oligomer
- Ligands
- 2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x ALF: TETRAFLUOROALUMINATE ION(Non-covalent)
- 1 x 5GP: GUANOSINE-5'-MONOPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
-
Focia, P.J. et al., Structure of a Gdp:Alf(4) Complex of the Srp Gtpases Ffh and Ftsy, and Identification of a Peripheral Nucleotide Interaction Site. J.Mol.Biol. (2006)
- Release Date
- 2006-10-11
- Peptides
- SIGNAL RECOGNITION PARTICLE PROTEIN: A
CELL DIVISION PROTEIN FTSY: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
F