- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.97 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 8 x IOD: IODIDE ION(Non-functional Binders)
- 2 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)
GNP.7: 26 residues within 4Å:- Chain A: L.106, Q.107, G.108, S.109, G.110, K.111, T.112, T.113, K.117, D.135, R.138, Q.144, G.190, K.246, D.248, G.271, V.272, S.273, E.274
- Chain B: N.90, G.91, R.121, L.175, K.178
- Ligands: MG.8, GNP.13
26 PLIP interactions:22 interactions with chain A, 4 interactions with chain B- Hydrogen bonds: A:G.108, A:G.110, A:K.111, A:K.111, A:T.112, A:T.112, A:T.113, A:T.113, A:K.117, A:D.135, A:R.138, A:R.138, A:Q.144, A:G.190, A:K.246, A:S.273, B:N.90
- Water bridges: A:T.112, A:T.113, A:Q.144, A:E.274, B:N.90, B:G.173, B:G.173
- Salt bridges: A:D.248
- pi-Cation interactions: A:K.246
GNP.13: 25 residues within 4Å:- Chain A: Q.107, G.108, R.138
- Chain B: V.89, N.90, G.91, V.92, G.93, K.94, T.95, T.96, K.100, D.118, R.121, Q.127, G.173, T.234, K.235, D.237, G.260, V.261, G.262, E.263
- Ligands: GNP.7, MG.14
28 PLIP interactions:21 interactions with chain B, 7 interactions with chain A- Hydrogen bonds: B:G.91, B:V.92, B:G.93, B:K.94, B:K.94, B:T.95, B:T.96, B:T.96, B:K.100, B:R.121, B:Q.127, B:Q.127, B:G.173, B:K.235, B:G.262, B:E.263
- Water bridges: B:T.95, B:T.95, B:T.96, A:R.138, A:R.138, A:R.138, A:R.138, A:G.190, A:G.190
- Salt bridges: B:D.237, B:E.263, A:R.138
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.8: 2 residues within 4Å:- Chain A: T.112
- Ligands: GNP.7
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:T.112, H2O.4, H2O.5, H2O.7
MG.14: 3 residues within 4Å:- Chain B: T.95, R.121
- Ligands: GNP.13
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:T.95, H2O.8, H2O.8, H2O.9
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.9: 7 residues within 4Å:- Chain A: L.106, L.192, Q.193
- Chain B: V.210, G.238, T.239, A.240
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:Q.193, B:A.240
- Water bridges: B:G.238
EDO.10: 4 residues within 4Å:- Chain B: K.133, S.136, I.137, P.138
No protein-ligand interaction detected (PLIP)- 1 x K: POTASSIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gawronski-Salerno, J. et al., Structure of the Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy. J.Struct.Biol. (2007)
- Release Date
- 2006-12-11
- Peptides
- SIGNAL RECOGNITION PARTICLE PROTEIN: A
CELL DIVISION PROTEIN FTSY: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.97 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 8 x IOD: IODIDE ION(Non-functional Binders)
- 2 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x K: POTASSIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gawronski-Salerno, J. et al., Structure of the Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy. J.Struct.Biol. (2007)
- Release Date
- 2006-12-11
- Peptides
- SIGNAL RECOGNITION PARTICLE PROTEIN: A
CELL DIVISION PROTEIN FTSY: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
E