SMTL ID : 2ocx.1

Crystal structure of Se-Met fucosyltransferase NodZ from Bradyrhizobium

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 7 residues within 4Å: Chain A: P.86, R.87, W.88, R.91, Q.103, R.106, E.110 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.87, A:R.87, A:W.88, A:Q.103, A:E.110 Salt bridges: A:R.91 PO4.2: 3 residues within 4Å: Chain A: E.4, F.6, S.79 3 PLIP interactions: 3 interactions with chain A Water bridges: A:E.4, A:S.79, A:S.79 PO4.3: 4 residues within 4Å: Chain A: E.59, R.151, S.152, E.153 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.152, A:S.152, A:S.152, A:R.155 Water bridges: A:R.151, A:R.151 Salt bridges: A:R.151

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.4: 1 residues within 4Å: Chain A: K.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.3, A:K.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brzezinski, K. et al., High-resolution structure of NodZ fucosyltransferase involved in the biosynthesis of the nodulation factor. Acta Biochim.Pol. (2007)

Release Date

2007-11-06

Peptides

Nodulation fucosyltransferase NodZ: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nodulation fucosyltransferase NodZ

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