SMTL ID : 3siw.1 (1 other biounit)

Crystal structure of NodZ alpha-1,6-fucosyltransferase co-crystallized with GDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 16 residues within 4Å: Chain A: G.14, F.15, G.16, D.17, Y.45, H.175, R.177, C.222, T.223, D.224, S.266, A.267, D.270, S.287, A.288, F.289 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:G.14, A:F.15, A:G.16, A:D.17, A:Y.45, A:S.266, A:D.270, A:A.288, A:F.289 Water bridges: A:D.17, A:D.17 Salt bridges: A:R.177, A:D.270 pi-Stacking: A:F.289, A:F.289

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 5 residues within 4Å: Chain A: E.59, R.151, S.152, E.153, R.155 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.152, A:S.152, A:S.152, A:R.155 Salt bridges: A:R.151 PO4.3: 4 residues within 4Å: Chain A: R.282, R.294, E.302, I.314 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.291 Salt bridges: A:R.282, A:R.294 PO4.4: 5 residues within 4Å: Chain A: P.86, R.87, W.88, Q.103, E.110 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:W.88, A:Q.103, A:Q.103, A:E.110 Water bridges: A:R.87, A:R.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brzezinski, K. et al., Structures of NodZ alpha-1,6-fucosyltransferase in complex with GDP and GDP-fucose. Acta Crystallogr.,Sect.D (2012)

Release Date

2012-02-08

Peptides

Nodulation fucosyltransferase NodZ: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nodulation fucosyltransferase NodZ

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