SMTL ID : 3six.2 (1 other biounit)

Crystal structure of NodZ alpha-1,6-fucosyltransferase soaked with GDP-fucose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 9 residues within 4Å: Chain A: G.14, Y.45, H.175, R.177, C.222, S.266, A.267, D.270, F.289 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.177, A:S.266, A:D.270 Water bridges: A:G.14, A:G.16 Salt bridges: A:D.270 pi-Stacking: A:F.289 pi-Cation interactions: A:R.177 GDP.4: 9 residues within 4Å: Chain B: G.14, Y.45, H.175, R.177, C.222, S.266, A.267, D.270, F.289 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:Y.45, B:R.177, B:S.266 Water bridges: B:G.14, B:G.16 Salt bridges: B:D.270 pi-Stacking: B:F.289 pi-Cation interactions: B:R.177

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 4 residues within 4Å: Chain A: E.59, R.151, S.152, R.155 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.152, A:S.152, A:S.152, A:R.155 Salt bridges: A:R.151 PO4.5: 4 residues within 4Å: Chain B: E.59, R.151, S.152, R.155 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:E.59, B:S.152, B:S.152, B:S.152, B:R.155 Salt bridges: B:R.151

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 1 residues within 4Å: Chain A: R.142 Ligand excluded by PLIP CL.6: 1 residues within 4Å: Chain B: R.142 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brzezinski, K. et al., Structures of NodZ alpha-1,6-fucosyltransferase in complex with GDP and GDP-fucose. Acta Crystallogr.,Sect.D (2012)

Release Date

2012-02-08

Peptides

Nodulation fucosyltransferase NodZ: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Nodulation fucosyltransferase NodZ

Related Entries With Identical Sequence