SMTL ID : 2of0.1

X-ray crystal structure of beta secretase complexed with compound 5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

3 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 3 residues within 4Å: Chain A: T.120, E.121, S.122 Ligand excluded by PLIP IOD.2: 2 residues within 4Å: Chain A: H.62, K.124 Ligand excluded by PLIP IOD.3: 1 residues within 4Å: Chain A: R.366 Ligand excluded by PLIP

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 5 residues within 4Å: Chain A: T.99, R.113, N.115, E.151, Q.160 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.160 Salt bridges: A:E.151

1 x CMZ: (2S)-1-(2,5-dimethylphenoxy)-3-morpholin-4-ylpropan-2-ol(Non-covalent)

CMZ.5: 12 residues within 4Å: Chain A: L.47, D.49, G.51, Y.88, F.125, W.132, Y.215, I.243, D.245, G.247, T.248, V.349 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.47, A:Y.88, A:F.125, A:W.132 Hydrogen bonds: A:D.49, A:D.245, A:T.248 Salt bridges: A:D.49, A:D.245

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Murray, C.W. et al., Application of fragment screening by X-ray crystallography to beta-Secretase. J.Med.Chem. (2007)

Release Date

2007-03-13

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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