SMTL ID : 2ohr.1

X-ray crystal structure of beta secretase complexed with compound 6a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

2 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 4 residues within 4Å: Chain A: H.62, T.120, E.121, S.122 Ligand excluded by PLIP IOD.2: 2 residues within 4Å: Chain A: H.62, K.124 Ligand excluded by PLIP

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 6 residues within 4Å: Chain A: R.113, A.114, N.115, E.151, S.156, Q.160 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:E.151

1 x 8IP: N~3~-(3-PYRIDIN-3-YLBENZYL)PYRIDINE-2,3-DIAMINE(Non-covalent)

8IP.4: 17 residues within 4Å: Chain A: G.28, Q.29, G.30, L.47, D.49, G.51, S.52, Y.88, F.125, I.127, W.132, I.135, D.245, G.247, T.248, T.249 Ligands: GOL.5 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.47, A:F.125, A:F.125, A:I.127, A:W.132 Hydrogen bonds: A:D.49, A:D.49, A:T.248

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 13 residues within 4Å: Chain A: K.26, S.27, G.28, Q.29, G.30, Y.31, V.187, T.249, R.324, A.352, V.353, E.356 Ligands: 8IP.4 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.28, A:G.30, A:R.324, A:R.324, A:E.356 Water bridges: A:E.356

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Congreve, M. et al., Application of fragment screening by X-ray crystallography to the discovery of aminopyridines as inhibitors of beta-secretase. J.Med.Chem. (2007)

Release Date

2007-03-13

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

Related Entries With Identical Sequence