SMTL ID : 2ohn.1

X-ray crystal structure of beta secretase complexed with 4-(4-fluorobenzyl)piperidine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

3 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 3 residues within 4Å: Chain A: T.120, E.121, S.122 Ligand excluded by PLIP IOD.2: 1 residues within 4Å: Chain A: R.113 Ligand excluded by PLIP IOD.3: 2 residues within 4Å: Chain A: H.62, K.124 Ligand excluded by PLIP

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 3 residues within 4Å: Chain A: G.389, P.390, F.391 No protein-ligand interaction detected (PLIP)

1 x 4FP: 4-(4-FLUOROBENZYL)PIPERIDINE(Non-covalent)

4FP.5: 12 residues within 4Å: Chain A: L.47, D.49, G.51, S.52, Y.88, K.124, F.125, W.132, I.135, D.245, G.247, T.248 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.47, A:Y.88, A:Y.88, A:W.132, A:I.135 Hydrogen bonds: A:D.245, A:T.248

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Murray, C.W. et al., Application of fragment screening by X-ray crystallography to beta-Secretase. J.Med.Chem. (2007)

Release Date

2007-03-13

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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