SMTL ID : 2ohs.1

X-ray crystal structure of beta secretase complexed with compound 6b

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

monomer

Ligands

2 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 4 residues within 4Å: Chain A: H.62, E.121, S.122, F.126 Ligand excluded by PLIP IOD.2: 2 residues within 4Å: Chain A: H.62, K.124 Ligand excluded by PLIP

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 3 residues within 4Å: Chain A: T.99, R.113, N.115 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:E.151

1 x 9IP: N~3~-[3-(5-METHOXYPYRIDIN-3-YL)BENZYL]PYRIDINE-2,3-DIAMINE(Non-covalent)

9IP.4: 19 residues within 4Å: Chain A: S.27, G.28, Q.29, G.30, L.47, D.49, G.51, S.52, Y.88, F.125, I.127, W.132, I.135, D.245, S.246, G.247, T.248, T.249, A.352 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.47, A:F.125, A:F.125, A:W.132, A:I.135 Hydrogen bonds: A:D.49, A:D.49, A:D.245, A:T.248 Water bridges: A:D.245

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Congreve, M. et al., Application of fragment screening by X-ray crystallography to the discovery of aminopyridines as inhibitors of beta-secretase. J.Med.Chem. (2007)

Release Date

2007-03-13

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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