SMTL ID : 2pr3.1

Factor XA inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

hetero-1-1-mer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.56, N.58, Q.61, E.62, E.63, E.66 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.56, A:N.58, A:Q.61, A:E.66 CA.2: 4 residues within 4Å: Chain A: Y.173, D.174, R.211, K.214 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:Y.173, A:D.174, A:R.211, A:K.214, H2O.2

1 x 237: (2R,4R)-N~1~-(4-CHLOROPHENYL)-N~2~-[3-FLUORO-2'-(METHYLSULFONYL)BIPHENYL-4-YL]-4-METHOXYPYRROLIDINE-1,2-DICARBOXAMIDE(Non-covalent)

237.3: 19 residues within 4Å: Chain A: K.82, E.83, T.84, Y.85, F.162, D.179, A.180, C.181, Q.182, V.203, S.204, W.205, G.206, E.207, G.208, C.209, G.216, I.217, Y.218 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.85, A:F.162, A:F.162, A:V.203, A:W.205, A:W.205 Hydrogen bonds: A:G.206, A:G.206, A:G.208, A:G.208 pi-Stacking: A:Y.85, A:F.162, A:W.205

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Van Huis, C.A. et al., Structure-based drug design of pyrrolidine-1, 2-dicarboxamides as a novel series of orally bioavailable factor Xa inhibitors. Chem.Biol.Drug Des. (2007)

Release Date

2007-08-14

Peptides

COAGULATION FACTOR X, HEAVY CHAIN: A
COAGULATION FACTOR X, LIGHT CHAIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

COAGULATION FACTOR X, HEAVY CHAIN

COAGULATION FACTOR X, LIGHT CHAIN

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