SMTL ID : 2q1j.1

The discovery of glycine and related amino acid-based factor xa inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: D.56, N.58, Q.61, E.66 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.56, A:N.58, A:Q.61, A:E.66, H2O.2

1 x FXI: 1-(butyl{[(4-chlorophenyl)amino]carbonyl}amino)-N-[3-fluoro-2'-(methylsulfonyl)biphenyl-4-yl]cyclopropanecarboxamide(Non-covalent)

FXI.2: 18 residues within 4Å: Chain A: K.82, E.83, T.84, Y.85, E.135, F.162, D.179, A.180, Q.182, V.203, W.205, G.206, E.207, G.208, C.209, G.216, I.217, Y.218 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:E.135, A:F.162, A:F.162, A:Q.182, A:V.203, A:W.205, A:W.205 Hydrogen bonds: A:G.206, A:G.206, A:G.208 Water bridges: A:S.185 pi-Stacking: A:Y.85, A:F.162, A:W.205

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kohrt, J.T. et al., The Discovery of Glycine and Related Amino Acid-Based Factor Xa Inhibitors. BIOORG.MED.CHEM. (2006)

Release Date

2007-08-14

Peptides

Activated factor Xa heavy chain (EC 3.4.21.6): A
Factor X light chain (EC 3.4.21.6): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Activated factor Xa heavy chain (EC 3.4.21.6)

Factor X light chain (EC 3.4.21.6)

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