- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.40 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 2 x PSZ: 4-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]THIOPHENE-2-CARBOXYLIC ACID(Covalent)
- 2 x PMP: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE(Non-covalent)
PMP.3: 15 residues within 4Å:- Chain A: G.102, G.103, T.104, W.130, H.178, N.183, D.211, A.213, Y.214, S.243, S.245, K.246, R.254
- Chain B: Y.65
- Ligands: PSZ.2
15 PLIP interactions:11 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:A.213
- Hydrogen bonds: A:G.103, A:T.104, A:T.104, A:N.183, A:Y.214, A:S.243, A:S.245, B:Y.65, B:Y.65
- Salt bridges: A:R.254
- pi-Stacking: A:W.130, A:W.130
- Water bridges: B:Y.65, B:S.284
PMP.17: 15 residues within 4Å:- Chain A: Y.65
- Chain B: G.102, G.103, T.104, W.130, H.178, N.183, D.211, A.213, Y.214, S.243, S.245, K.246, R.254
- Ligands: PSZ.16
13 PLIP interactions:4 interactions with chain A, 9 interactions with chain B- Hydrogen bonds: A:Y.65, A:Y.65, B:G.103, B:T.104, B:N.183, B:S.243, B:S.245
- Water bridges: A:Y.65, A:S.284
- Hydrophobic interactions: B:A.213
- Salt bridges: B:R.254
- pi-Stacking: B:W.130, B:W.130
- 22 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 6 residues within 4Å:- Chain A: K.134, N.138, L.142, E.143, V.144
- Ligands: GOL.11
Ligand excluded by PLIPGOL.5: 8 residues within 4Å:- Chain A: G.216, G.220, L.221, E.308, L.311, T.312, R.315
- Ligands: GOL.12
Ligand excluded by PLIPGOL.6: 2 residues within 4Å:- Chain A: P.72, R.76
Ligand excluded by PLIPGOL.7: 8 residues within 4Å:- Chain A: Y.36, T.43, P.44, L.46, K.246, G.249, Y.251, M.314
Ligand excluded by PLIPGOL.8: 7 residues within 4Å:- Chain A: D.69, P.72, G.75, R.76, Q.79, R.96, T.97
Ligand excluded by PLIPGOL.9: 7 residues within 4Å:- Chain A: H.155, G.186, I.187, D.188, K.343, Q.344, N.345
Ligand excluded by PLIPGOL.10: 1 residues within 4Å:- Chain A: Q.316
Ligand excluded by PLIPGOL.11: 5 residues within 4Å:- Chain A: N.138, G.141, L.142, E.143
- Ligands: GOL.4
Ligand excluded by PLIPGOL.12: 5 residues within 4Å:- Chain A: G.220, L.221, E.222, E.223
- Ligands: GOL.5
Ligand excluded by PLIPGOL.13: 7 residues within 4Å:- Chain A: K.246
- Chain B: Y.65, R.280, S.284, N.285
- Ligands: PSZ.2, GOL.14
Ligand excluded by PLIPGOL.14: 5 residues within 4Å:- Chain A: I.33, V.35, K.37
- Chain B: N.64
- Ligands: GOL.13
Ligand excluded by PLIPGOL.18: 6 residues within 4Å:- Chain B: K.134, N.138, L.142, E.143, V.144
- Ligands: GOL.25
Ligand excluded by PLIPGOL.19: 8 residues within 4Å:- Chain B: G.216, G.220, L.221, E.308, L.311, T.312, R.315
- Ligands: GOL.26
Ligand excluded by PLIPGOL.20: 2 residues within 4Å:- Chain B: P.72, R.76
Ligand excluded by PLIPGOL.21: 8 residues within 4Å:- Chain B: Y.36, T.43, P.44, L.46, K.246, G.249, Y.251, M.314
Ligand excluded by PLIPGOL.22: 7 residues within 4Å:- Chain B: D.69, P.72, G.75, R.76, Q.79, R.96, T.97
Ligand excluded by PLIPGOL.23: 7 residues within 4Å:- Chain B: H.155, G.186, I.187, D.188, K.343, Q.344, N.345
Ligand excluded by PLIPGOL.24: 1 residues within 4Å:- Chain B: Q.316
Ligand excluded by PLIPGOL.25: 5 residues within 4Å:- Chain B: N.138, G.141, L.142, E.143
- Ligands: GOL.18
Ligand excluded by PLIPGOL.26: 5 residues within 4Å:- Chain B: G.220, L.221, E.222, E.223
- Ligands: GOL.19
Ligand excluded by PLIPGOL.27: 7 residues within 4Å:- Chain A: Y.65, R.280, S.284, N.285
- Chain B: K.246
- Ligands: PSZ.16, GOL.28
Ligand excluded by PLIPGOL.28: 5 residues within 4Å:- Chain A: N.64
- Chain B: I.33, V.35, K.37
- Ligands: GOL.27
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, D. et al., Inactivation of Escherichia coli l-Aspartate Aminotransferase by (S)-4-Amino-4,5-dihydro-2-thiophenecarboxylic Acid Reveals "A Tale of Two Mechanisms". Biochemistry (2007)
- Release Date
- 2007-09-04
- Peptides
- Aspartate aminotransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.40 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 2 x PSZ: 4-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]THIOPHENE-2-CARBOXYLIC ACID(Covalent)
- 2 x PMP: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE(Non-covalent)
- 22 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, D. et al., Inactivation of Escherichia coli l-Aspartate Aminotransferase by (S)-4-Amino-4,5-dihydro-2-thiophenecarboxylic Acid Reveals "A Tale of Two Mechanisms". Biochemistry (2007)
- Release Date
- 2007-09-04
- Peptides
- Aspartate aminotransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A