SMTL ID : 2q9y.1

Trichodiene synthase: Complex with Mg, inorganic pyrophosphate, and benzyl triethyl ammonium cation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

homo-dimer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: Y.113, L.117, W.128, N.132, I.151 Chain B: F.114 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.113, A:N.132 EDO.7: 6 residues within 4Å: Chain A: F.114 Chain B: Y.113, W.128, N.132, F.135, I.151 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.113, B:Y.113, B:N.132, B:I.151

3 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 6 residues within 4Å: Chain B: R.182, N.225, D.226, S.229, E.233 Ligands: POP.5 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:S.229, B:E.233, B:E.233 MG.3: 6 residues within 4Å: Chain B: D.100, K.232, D.239, R.304 Ligands: MG.4, POP.5 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.100 MG.4: 4 residues within 4Å: Chain B: D.100, E.164 Ligands: MG.3, POP.5 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.100, B:D.100

1 x POP: PYROPHOSPHATE 2-(Non-covalent)

POP.5: 12 residues within 4Å: Chain B: D.100, R.182, N.225, S.229, K.232, E.233, R.304, Y.305 Ligands: MG.2, MG.3, MG.4, BTM.6 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:N.185, B:N.225, B:N.225, B:S.229, B:Y.305 Salt bridges: B:R.182, B:K.232, B:R.304

1 x BTM: N-benzyl-N,N-diethylethanaminium(Non-covalent)

BTM.6: 16 residues within 4Å: Chain B: I.70, M.73, T.96, L.97, D.100, R.182, G.186, L.187, V.191, M.221, V.222, N.225, Y.295, W.298, Y.305 Ligands: POP.5 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:I.70, B:L.97, B:L.187, B:V.191, B:V.222, B:W.298

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vedula, L.S. et al., Exploring biosynthetic diversity with trichodiene synthase. Arch.Biochem.Biophys. (2007)

Release Date

2008-04-22

Peptides

Trichodiene synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Trichodiene synthase

Related Entries With Identical Sequence