- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.45 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 2 x PSZ: 4-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]THIOPHENE-2-CARBOXYLIC ACID(Covalent)
PSZ.3: 19 residues within 4Å:- Chain A: G.34, G.102, G.103, T.104, W.130, H.178, N.183, D.211, A.213, Y.214, S.243, S.245, K.246, R.254, F.348, R.374
- Chain B: Y.65
- Ligands: PMP.4, GOL.11
18 PLIP interactions:3 interactions with chain B, 15 interactions with chain A- Hydrogen bonds: B:Y.65, A:G.103, A:T.104, A:T.104, A:T.104, A:N.183, A:Y.214, A:Y.214, A:S.243, A:S.245
- Water bridges: B:R.280, B:S.284, A:R.374
- Hydrophobic interactions: A:A.213
- Salt bridges: A:R.254, A:R.374
- pi-Stacking: A:W.130, A:W.130
PSZ.14: 19 residues within 4Å:- Chain A: Y.65
- Chain B: G.34, G.102, G.103, T.104, W.130, H.178, N.183, D.211, A.213, Y.214, S.243, S.245, K.246, R.254, F.348, R.374
- Ligands: PMP.15, GOL.22
16 PLIP interactions:13 interactions with chain B, 3 interactions with chain A- Hydrophobic interactions: B:A.213
- Hydrogen bonds: B:G.103, B:T.104, B:T.104, B:N.183, B:Y.214, B:S.243, B:S.245, A:Y.65
- Water bridges: B:R.374, A:R.280, A:S.284
- Salt bridges: B:R.254, B:R.374
- pi-Stacking: B:W.130, B:W.130
- 2 x PMP: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE(Non-covalent)
PMP.4: 15 residues within 4Å:- Chain A: G.102, G.103, T.104, W.130, H.178, N.183, D.211, A.213, Y.214, S.243, S.245, K.246, R.254
- Chain B: Y.65
- Ligands: PSZ.3
15 PLIP interactions:4 interactions with chain B, 11 interactions with chain A- Hydrogen bonds: B:Y.65, B:Y.65, A:G.103, A:T.104, A:T.104, A:N.183, A:Y.214, A:S.243, A:S.245
- Water bridges: B:Y.65, B:S.284
- Hydrophobic interactions: A:A.213
- Salt bridges: A:R.254
- pi-Stacking: A:W.130, A:W.130
PMP.15: 15 residues within 4Å:- Chain A: Y.65
- Chain B: G.102, G.103, T.104, W.130, H.178, N.183, D.211, A.213, Y.214, S.243, S.245, K.246, R.254
- Ligands: PSZ.14
13 PLIP interactions:9 interactions with chain B, 4 interactions with chain A- Hydrophobic interactions: B:A.213
- Hydrogen bonds: B:G.103, B:T.104, B:N.183, B:S.243, B:S.245, A:Y.65, A:Y.65
- Salt bridges: B:R.254
- pi-Stacking: B:W.130, B:W.130
- Water bridges: A:Y.65, A:S.284
- 14 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 7 residues within 4Å:- Chain A: G.216, G.220, L.221, E.308, L.311, T.312, R.315
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:L.221, A:E.308
- Water bridges: A:E.222, A:T.312
GOL.6: 9 residues within 4Å:- Chain A: Y.36, T.43, P.44, L.46, F.217, K.246, G.249, Y.251, M.314
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:P.44
- Water bridges: A:T.43, B:T.62
GOL.7: 7 residues within 4Å:- Chain A: P.72, G.75, R.76, Q.79, A.95, R.96, T.97
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:P.72, A:T.97, A:T.97
- Water bridges: A:G.75, A:A.95
GOL.8: 3 residues within 4Å:- Chain A: R.315, Q.316, Q.319
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.315, A:R.315, A:Q.316
GOL.9: 4 residues within 4Å:- Chain A: Y.55, T.296, N.300, L.303
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.300
- Water bridges: A:T.296
GOL.10: 6 residues within 4Å:- Chain A: T.40, G.41, G.379, T.381, D.383, N.384
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:G.379
- Water bridges: A:N.30, A:K.37, A:E.39, A:T.40, A:G.41
GOL.11: 6 residues within 4Å:- Chain A: K.246
- Chain B: Y.65, R.280, S.284, N.285
- Ligands: PSZ.3
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.280, B:S.284, B:N.285
- Water bridges: B:N.64
GOL.16: 7 residues within 4Å:- Chain B: G.216, G.220, L.221, E.308, L.311, T.312, R.315
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:L.221, B:E.308, B:E.308, B:T.312
- Water bridges: B:E.222
GOL.17: 9 residues within 4Å:- Chain B: Y.36, T.43, P.44, L.46, F.217, K.246, G.249, Y.251, M.314
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:P.44, B:Y.251
- Water bridges: B:T.43, B:G.249
GOL.18: 7 residues within 4Å:- Chain B: P.72, G.75, R.76, Q.79, A.95, R.96, T.97
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:P.72, B:T.97, B:T.97
- Water bridges: B:G.75, B:A.95
GOL.19: 3 residues within 4Å:- Chain B: R.315, Q.316, Q.319
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.315, B:Q.316
GOL.20: 4 residues within 4Å:- Chain B: Y.55, T.296, N.300, L.303
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.300
- Water bridges: B:T.296
GOL.21: 6 residues within 4Å:- Chain B: T.40, G.41, G.379, T.381, D.383, N.384
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:G.379, B:T.381
- Water bridges: B:N.30, B:K.37, B:E.39, B:T.40, B:G.41
GOL.22: 6 residues within 4Å:- Chain A: Y.65, R.280, S.284, N.285
- Chain B: K.246
- Ligands: PSZ.14
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.280, A:S.284, A:N.285
- Water bridges: A:N.64
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, D. et al., Inactivation of Escherichia coli L-aspartate aminotransferase by (S)-4-amino-4,5-dihydro-2-thiophenecarboxylic acid reveals "a tale of two mechanisms". Biochemistry (2007)
- Release Date
- 2007-12-04
- Peptides
- Aspartate aminotransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.45 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 2 x PSZ: 4-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]THIOPHENE-2-CARBOXYLIC ACID(Covalent)
- 2 x PMP: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE(Non-covalent)
- 14 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, D. et al., Inactivation of Escherichia coli L-aspartate aminotransferase by (S)-4-amino-4,5-dihydro-2-thiophenecarboxylic acid reveals "a tale of two mechanisms". Biochemistry (2007)
- Release Date
- 2007-12-04
- Peptides
- Aspartate aminotransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A