- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 2 x PSZ: 4-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]THIOPHENE-2-CARBOXYLIC ACID(Covalent)
PSZ.4: 21 residues within 4Å:- Chain A: G.34, G.102, G.103, T.104, L.107, W.130, H.133, H.178, N.183, D.211, A.213, Y.214, S.243, S.245, K.246, R.254, F.348, R.374
- Chain B: Y.65
- Ligands: PMP.5, GOL.13
18 PLIP interactions:16 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:W.130, A:N.183, A:A.213
- Hydrogen bonds: A:G.103, A:T.104, A:T.104, A:T.104, A:N.183, A:Y.214, A:S.243, A:S.245
- Water bridges: A:G.32, B:R.280, B:S.284
- Salt bridges: A:R.254, A:R.374
- pi-Stacking: A:W.130, A:W.130
PSZ.17: 21 residues within 4Å:- Chain A: Y.65
- Chain B: G.34, G.102, G.103, T.104, L.107, W.130, H.133, H.178, N.183, D.211, A.213, Y.214, S.243, S.245, K.246, R.254, F.348, R.374
- Ligands: PMP.18, GOL.26
17 PLIP interactions:14 interactions with chain B, 3 interactions with chain A- Hydrophobic interactions: B:W.130, B:N.183, B:A.213
- Hydrogen bonds: B:G.103, B:T.104, B:T.104, B:N.183, B:S.243, B:S.245, A:Y.65
- Water bridges: B:G.32, A:R.280, A:S.284
- Salt bridges: B:R.254, B:R.374
- pi-Stacking: B:W.130, B:W.130
- 2 x PMP: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE(Non-covalent)
PMP.5: 15 residues within 4Å:- Chain A: G.102, G.103, T.104, W.130, H.178, N.183, D.211, A.213, Y.214, S.243, S.245, K.246, R.254
- Chain B: Y.65
- Ligands: PSZ.4
14 PLIP interactions:11 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:G.103, A:T.104, A:T.104, A:N.183, A:Y.214, A:S.243, A:S.245, B:Y.65, B:Y.65
- Water bridges: A:F.212, B:S.284
- Salt bridges: A:R.254
- pi-Stacking: A:W.130, A:W.130
PMP.18: 15 residues within 4Å:- Chain A: Y.65
- Chain B: G.102, G.103, T.104, W.130, H.178, N.183, D.211, A.213, Y.214, S.243, S.245, K.246, R.254
- Ligands: PSZ.17
12 PLIP interactions:9 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:G.103, B:T.104, B:N.183, B:S.243, B:S.245, A:Y.65, A:Y.65
- Water bridges: B:F.212, A:S.284
- Salt bridges: B:R.254
- pi-Stacking: B:W.130, B:W.130
- 16 x GOL: GLYCEROL(Non-functional Binders)
GOL.6: 8 residues within 4Å:- Chain A: G.216, G.220, L.221, E.308, L.311, T.312, R.315
- Ligands: SO4.3
Ligand excluded by PLIPGOL.7: 8 residues within 4Å:- Chain A: Y.36, T.43, P.44, L.46, K.246, G.249, Y.251, M.314
Ligand excluded by PLIPGOL.8: 7 residues within 4Å:- Chain A: P.72, G.75, R.76, Q.79, A.95, R.96, T.97
Ligand excluded by PLIPGOL.9: 4 residues within 4Å:- Chain A: R.315, Q.316, Q.319
- Ligands: SO4.3
Ligand excluded by PLIPGOL.10: 4 residues within 4Å:- Chain A: Y.55, T.296, N.300, L.303
Ligand excluded by PLIPGOL.11: 5 residues within 4Å:- Chain A: N.138, G.141, L.142, E.143
- Ligands: SO4.1
Ligand excluded by PLIPGOL.12: 5 residues within 4Å:- Chain A: P.189, T.190, L.191, R.219, N.345
Ligand excluded by PLIPGOL.13: 5 residues within 4Å:- Chain A: K.246
- Chain B: Y.65, R.280, N.285
- Ligands: PSZ.4
Ligand excluded by PLIPGOL.19: 8 residues within 4Å:- Chain B: G.216, G.220, L.221, E.308, L.311, T.312, R.315
- Ligands: SO4.16
Ligand excluded by PLIPGOL.20: 8 residues within 4Å:- Chain B: Y.36, T.43, P.44, L.46, K.246, G.249, Y.251, M.314
Ligand excluded by PLIPGOL.21: 7 residues within 4Å:- Chain B: P.72, G.75, R.76, Q.79, A.95, R.96, T.97
Ligand excluded by PLIPGOL.22: 4 residues within 4Å:- Chain B: R.315, Q.316, Q.319
- Ligands: SO4.16
Ligand excluded by PLIPGOL.23: 4 residues within 4Å:- Chain B: Y.55, T.296, N.300, L.303
Ligand excluded by PLIPGOL.24: 5 residues within 4Å:- Chain B: N.138, G.141, L.142, E.143
- Ligands: SO4.14
Ligand excluded by PLIPGOL.25: 5 residues within 4Å:- Chain B: P.189, T.190, L.191, R.219, N.345
Ligand excluded by PLIPGOL.26: 5 residues within 4Å:- Chain A: Y.65, R.280, N.285
- Chain B: K.246
- Ligands: PSZ.17
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, D. et al., Inactivation of Escherichia coli l-Aspartate Aminotransferase by (S)-4-Amino-4,5-dihydro-2-thiophenecarboxylic Acid Reveals "A Tale of Two Mechanisms". Biochemistry (2007)
- Release Date
- 2007-09-04
- Peptides
- Aspartate aminotransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 2 x PSZ: 4-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]THIOPHENE-2-CARBOXYLIC ACID(Covalent)
- 2 x PMP: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE(Non-covalent)
- 16 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, D. et al., Inactivation of Escherichia coli l-Aspartate Aminotransferase by (S)-4-Amino-4,5-dihydro-2-thiophenecarboxylic Acid Reveals "A Tale of Two Mechanisms". Biochemistry (2007)
- Release Date
- 2007-09-04
- Peptides
- Aspartate aminotransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A