- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 9 x PO4: PHOSPHATE ION(Non-functional Binders)
- 2 x WH6: 2-[(1R)-2-carboxy-1-(naphthalen-1-ylmethyl)ethyl]-1,3-dioxo-2,3-dihydro-1H-isoindole-5-carboxylic acid(Non-covalent)
WH6.5: 13 residues within 4Å:- Chain A: S.61, L.116, Q.117, N.149, V.208, S.209, Y.218, L.290, G.314, A.315, T.316, G.317
- Ligands: DMS.6
17 PLIP interactions:17 interactions with chain A- Hydrophobic interactions: A:L.116, A:Q.117, A:L.290
- Hydrogen bonds: A:S.61, A:N.149, A:S.209, A:A.315, A:G.317
- Water bridges: A:N.286, A:G.318, A:N.340, A:N.340, A:N.340, A:N.343, A:N.343, A:R.346
- pi-Stacking: A:Y.218
WH6.12: 14 residues within 4Å:- Chain B: S.61, L.116, Q.117, N.149, V.208, S.209, Y.218, N.286, L.290, G.314, A.315, T.316, G.317
- Ligands: PO4.10
17 PLIP interactions:17 interactions with chain B- Hydrophobic interactions: B:L.116, B:Q.117, B:L.290
- Hydrogen bonds: B:S.61, B:N.149, B:S.209, B:A.315, B:G.317
- Water bridges: B:S.209, B:Y.218, B:G.318, B:N.340, B:N.340, B:N.343, B:N.343, B:R.346
- pi-Stacking: B:Y.218
- 1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Babaoglu, K. et al., Comprehensive mechanistic analysis of hits from high-throughput and docking screens against beta-lactamase. J.Med.Chem. (2008)
- Release Date
- 2008-04-15
- Peptides
- Beta-lactamase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
SMTL ID : 2r9x.3 (2 other biounits)
AmpC beta-lactamase with bound Phthalamide inhibitor
Beta-lactamase
Toggle Identical (AB)Related Entries With Identical Sequence
1c3b.1 | 1fco.1 | 1fco.2 | 1ga9.1 | 1ga9.2 | 1iel.1 | 1iel.2 | 1iem.1 | 1iem.2 | 1kds.1 | 1kds.2 | 1kdw.1 | 1kdw.2 | 1ke0.1 | 1ke0.2 | 1ke3.1 | 1ke3.2 | 1ke4.1 | 1ke4.2 | 1kvm.1 | 1kvm.2 | 1l2s.1 | 1l2s.2 | 1ll5.1 | 1ll5.2 | 1ll9.1 | 1ll9.2 | 1llb.1 | 1llb.2 | 1mxo.1 more...less...1mxo.2 | 1my8.1 | 1my8.2 | 1xgi.1 | 1xgi.2 | 1xgj.1 | 1xgj.2 | 2bls.1 | 2hdq.1 | 2hdq.2 | 2hdr.1 | 2hdr.2 | 2hds.1 | 2hds.2 | 2hdu.1 | 2hdu.2 | 2i72.1 | 2p9v.1 | 2p9v.2 | 2pu2.1 | 2pu2.2 | 2pu4.1 | 2pu4.2 | 2r9w.1 | 2r9w.2 | 2r9w.3 | 2r9x.1 | 2r9x.2 | 2rcx.1 | 2rcx.2 | 3bls.1 | 3bls.2 | 3bm6.1 | 3gqz.1 | 3gqz.2 | 3gr2.1 | 3gr2.2 | 3grj.1 | 3grj.2 | 3gsg.1 | 3gsg.2 | 3gtc.1 | 3gtc.2 | 3gv9.1 | 3gv9.2 | 3gvb.1 | 3gvb.2 | 3o86.1 | 3o86.2 | 3o87.1 | 3o87.2 | 3o88.1 | 3o88.2 | 4e3i.1 | 4e3i.2 | 4e3j.1 | 4e3j.2 | 4e3k.1 | 4e3k.2 | 4e3l.1 | 4e3l.2 | 4e3m.1 | 4e3m.2 | 4e3n.1 | 4e3n.2 | 4e3o.1 | 4e3o.2 | 4jxg.1 | 4jxg.2 | 4jxs.1 | 4jxs.2 | 4jxs.3 | 4jxv.1 | 4jxv.2 | 4jxv.3 | 4jxw.1 | 4jxw.2 | 4jxw.3 | 4kg2.1 | 4kg2.2 | 4kg2.3 | 4kz3.1 | 4kz3.2 | 4kz4.1 | 4kz4.2 | 4kz5.1 | 4kz5.2 | 4kz6.1 | 4kz6.2 | 4kz7.1 | 4kz7.2 | 4kz8.1 | 4kz8.2 | 4kz9.1 | 4kz9.2 | 4kza.1 | 4kza.2 | 4kzb.1 | 4kzb.2 | 4lv0.1 | 4lv0.2 | 4lv1.1 | 4lv1.2 | 4lv2.1 | 4lv2.2 | 4lv3.1 | 4lv3.2 | 4okp.1 | 4okp.2 | 4old.1 | 4old.2 | 4olg.1 | 6dpt.1 | 6dpt.2 | 6dpx.1 | 6dpx.2 | 6dpy.1 | 6dpy.2 | 6dpz.1 | 6dpz.2 | 6t35.1 | 6t3d.1 | 6t5y.1 | 6t7l.1 | 6tbw.1 | 6tpm.1 | 6yen.1 | 6yeo.1 | 6yeo.2 | 6yeo.3 | 6yeo.4 | 6ypd.1