SMTL ID : 2vbd.1

Isopenicillin N synthase with substrate analogue L,L,L-ACOMP (unexposed)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x FE2: FE (II) ION(Non-covalent)

FE2.1: 4 residues within 4Å: Chain A: H.214, D.216, H.270 Ligands: V10.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.214, A:D.216, A:H.270, H2O.6, H2O.9

1 x V10: N^6^-[(1R)-2-[(1R)-1-carboxy-2-(methylsulfanyl)ethoxy]-2-oxo-1-(sulfanylmethyl)ethyl]-6-oxo-L-lysine(Non-covalent)

V10.2: 15 residues within 4Å: Chain A: R.87, Y.91, C.104, S.183, I.187, Y.189, F.211, H.214, D.216, V.272, F.285, L.321, L.324, T.331 Ligands: FE2.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.285, A:L.321, A:L.324 Hydrogen bonds: A:Y.91, A:Y.91, A:S.183, A:Y.189, A:Y.189, A:S.281, A:T.331 Water bridges: A:Y.91, A:N.287 Salt bridges: A:R.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ge, W. et al., The Crystal Structure of an Lll-Configured Depsipeptide Substrate Analogue Bound to Isopenicillin N Synthase. Org.Biomol.Chem. (2010)

Release Date

2008-09-23

Peptides

ISOPENICILLIN N SYNTHETASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ISOPENICILLIN N SYNTHETASE

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