SMTL ID : 6zak.1

Room temperature XFEL Isopenicillin N synthase structure in complex with the Fe(IV)=O mimic VO and ACV.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.37, R.300 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.37, A:R.300

1 x ACV: L-D-(A-AMINOADIPOYL)-L-CYSTEINYL-D-VALINE(Non-covalent)

ACV.2: 24 residues within 4Å: Chain A: R.87, Y.91, C.104, L.106, S.183, V.185, I.187, Y.189, F.211, H.214, D.216, T.221, L.223, Q.225, L.231, H.270, V.272, S.281, P.283, F.285, L.321, L.324, T.331 Ligands: VVO.3 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.272, A:P.283, A:F.285, A:L.321, A:L.324 Hydrogen bonds: A:Y.91, A:S.183, A:S.183, A:Q.225, A:S.281 Water bridges: A:Y.189, A:T.331 Salt bridges: A:R.87

1 x VVO: oxovanadium(2+)(Non-covalent)

VVO.3: 5 residues within 4Å: Chain A: H.214, D.216, L.231, H.270 Ligands: ACV.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rabe, P. et al., Room temperature XFEL Isopenicillin N synthase structure in complex with the Fe(IV)=O mimic VO and ACV. To Be Published

Release Date

2022-01-12

Peptides

Isopenicillin N synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Isopenicillin N synthase

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