SMTL ID : 2vf7.1 (4 other biounits)

Crystal structure of UvrA2 from Deinococcus radiodurans

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 14 residues within 4Å: Chain A: Y.370, R.375, N.511, N.512, V.531, S.532, G.533, S.534, G.535, K.536, S.537, T.538, Q.542, G.810 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:Y.370, A:R.375, A:N.511, A:G.533, A:S.534, A:G.535, A:K.536, A:S.537, A:S.537, A:T.538, A:T.538, A:Q.542 Water bridges: A:G.372, A:K.536 Salt bridges: A:K.536 pi-Cation interactions: A:R.375, A:R.375 ADP.2: 15 residues within 4Å: Chain A: H.24, N.25, V.44, S.45, G.46, S.47, G.48, K.49, S.50, S.51, R.101, Y.721, L.722, Q.726, E.730 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:G.46, A:S.47, A:G.48, A:K.49, A:S.50, A:S.51, A:S.51, A:R.101, A:Q.726 Water bridges: A:K.49, A:K.49, A:S.732 Salt bridges: A:K.49, A:R.101 pi-Stacking: A:H.24, A:H.24 ADP.5: 13 residues within 4Å: Chain B: Y.370, R.375, N.511, N.512, V.531, G.533, S.534, G.535, K.536, S.537, T.538, Q.542, G.810 20 PLIP interactions: 20 interactions with chain B Hydrogen bonds: B:Y.370, B:R.375, B:G.533, B:S.534, B:G.535, B:K.536, B:S.537, B:S.537, B:T.538, B:Q.542 Water bridges: B:Y.370, B:G.372, B:R.375, B:R.375, B:R.375, B:K.536, B:E.811 Salt bridges: B:K.536 pi-Cation interactions: B:R.375, B:R.375 ADP.6: 15 residues within 4Å: Chain B: H.24, N.25, V.44, S.45, G.46, S.47, G.48, K.49, S.50, S.51, R.101, Y.721, L.722, Q.726, E.730 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:G.46, B:S.47, B:G.48, B:K.49, B:S.50, B:S.50, B:S.51, B:S.51, B:R.101, B:R.101, B:Q.726 Salt bridges: B:K.49 pi-Stacking: B:H.24, B:H.24

4 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: C.151, C.154, C.287, C.290 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.151, A:C.154, A:C.287, A:C.290 ZN.4: 4 residues within 4Å: Chain A: C.641, C.644, C.664, C.667 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.641, A:C.644, A:C.664, A:C.667 ZN.7: 4 residues within 4Å: Chain B: C.151, C.154, C.287, C.290 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.151, B:C.154, B:C.287, B:C.290 ZN.8: 4 residues within 4Å: Chain B: C.641, C.644, C.664, C.667 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.641, B:C.644, B:C.664, B:C.667

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Timmins, J. et al., Structural and mutational analyses of Deinococcus radiodurans UvrA2 provide insight into DNA binding and damage recognition by UvrAs. Structure (2009)

Release Date

2008-12-16

Peptides

EXCINUCLEASE ABC, SUBUNIT A.: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

EXCINUCLEASE ABC, SUBUNIT A.

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