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SMTL ID : 2vf8.3
(2 other biounits)
Crystal structure of UvrA2 from Deinococcus radiodurans
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 3.00 Å
Oligo State
monomer
Ligands
2 x
ADP
:
ADENOSINE-5'-DIPHOSPHATE
(Non-covalent)
ADP.1:
14 residues within 4Å:
Chain A:
H.24
,
N.25
,
V.44
,
S.45
,
G.46
,
S.47
,
G.48
,
K.49
,
S.50
,
S.51
,
R.101
,
L.722
,
Q.726
,
E.730
16
PLIP interactions
:
16 interactions with chain A
Hydrogen bonds:
A:V.44
,
A:G.46
,
A:S.47
,
A:G.48
,
A:K.49
,
A:S.50
,
A:S.50
,
A:S.50
,
A:S.51
,
A:S.51
,
A:Q.726
Water bridges:
A:H.24
Salt bridges:
A:K.49
,
A:R.101
pi-Cation interactions:
A:H.24
,
A:H.24
ADP.2:
18 residues within 4Å:
Chain A:
Y.370
,
L.371
,
R.375
,
T.379
,
N.511
,
N.512
,
V.531
,
S.532
,
G.533
,
S.534
,
G.535
,
K.536
,
S.537
,
T.538
,
Q.542
,
D.568
,
H.569
,
G.810
17
PLIP interactions
:
17 interactions with chain A
Hydrogen bonds:
A:Y.370
,
A:R.375
,
A:N.512
,
A:V.531
,
A:G.533
,
A:G.533
,
A:S.534
,
A:G.535
,
A:K.536
,
A:S.537
,
A:S.537
,
A:T.538
,
A:Q.542
,
A:D.568
Salt bridges:
A:K.536
pi-Cation interactions:
A:R.375
,
A:R.375
2 x
ZN
:
ZINC ION
(Non-covalent)
ZN.3:
4 residues within 4Å:
Chain A:
C.151
,
C.154
,
C.287
,
C.290
4
PLIP interactions
:
4 interactions with chain A
Metal complexes:
A:C.151
,
A:C.154
,
A:C.287
,
A:C.290
ZN.4:
4 residues within 4Å:
Chain A:
C.641
,
C.644
,
C.664
,
C.667
4
PLIP interactions
:
4 interactions with chain A
Metal complexes:
A:C.641
,
A:C.644
,
A:C.664
,
A:C.667
5 x
SO4
:
SULFATE ION
(Non-functional Binders)
SO4.5:
2 residues within 4Å:
Chain A:
S.112
,
R.121
3
PLIP interactions
:
3 interactions with chain A
Hydrogen bonds:
A:S.112
Water bridges:
A:S.143
Salt bridges:
A:R.121
SO4.6:
4 residues within 4Å:
Chain A:
Y.130
,
Q.134
,
I.136
,
R.342
1
PLIP interactions
:
1 interactions with chain A
Salt bridges:
A:R.342
SO4.7:
6 residues within 4Å:
Chain A:
L.364
,
L.366
,
G.367
,
L.368
,
G.369
,
Y.370
3
PLIP interactions
:
3 interactions with chain A
Hydrogen bonds:
A:G.367
,
A:G.369
,
A:Y.370
SO4.8:
2 residues within 4Å:
Chain A:
K.474
,
H.475
2
PLIP interactions
:
2 interactions with chain A
Salt bridges:
A:K.474
,
A:H.475
SO4.9:
5 residues within 4Å:
Chain A:
G.595
,
R.596
,
T.597
,
R.599
,
S.600
4
PLIP interactions
:
4 interactions with chain A
Hydrogen bonds:
A:R.596
,
A:T.597
,
A:T.597
,
A:S.600
1 x
PO4
:
PHOSPHATE ION
(Non-functional Binders)
PO4.10:
5 residues within 4Å:
Chain A:
S.50
,
F.54
,
Q.98
,
R.101
,
D.406
2
PLIP interactions
:
2 interactions with chain A
Hydrogen bonds:
A:D.406
Salt bridges:
A:R.101
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Timmins, J. et al., Structural and Mutational Analyses of Deinococcus Radiodurans Uvra2 Provide Insight Into DNA Binding and Damage Recognition by Uvras. Structure (2009)
Release Date
2008-12-16
Peptides
EXCINUCLEASE ABC SUBUNIT A:
A
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
B
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EXCINUCLEASE ABC SUBUNIT A
Related Entries With Identical Sequence
2vf7.1
|
2vf7.2
|
2vf7.3
|
2vf7.4
|
2vf7.5
|
2vf8.1
|
2vf8.2
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