SMTL ID : 2vf8.2 (2 other biounits)

Crystal structure of UvrA2 from Deinococcus radiodurans

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 15 residues within 4Å: Chain A: H.24, N.25, V.44, S.45, G.46, S.47, G.48, K.49, S.50, S.51, R.101, G.458, Y.721, Q.726, E.730 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:H.24, A:N.25, A:G.46, A:S.47, A:G.48, A:S.50, A:S.50, A:S.50, A:S.51, A:S.51, A:R.101, A:Q.726, A:E.730 Salt bridges: A:K.49, A:R.101 pi-Stacking: A:H.24, A:H.24 ADP.2: 13 residues within 4Å: Chain A: Y.370, R.375, T.379, N.511, N.512, V.531, G.533, S.534, G.535, K.536, S.537, T.538, G.810 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:Y.370, A:R.375, A:N.511, A:G.533, A:S.534, A:G.535, A:K.536, A:S.537, A:S.537, A:S.537, A:T.538, A:Q.542 Salt bridges: A:K.536 pi-Cation interactions: A:R.375

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: C.151, C.154, C.287, C.290 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.151, A:C.154, A:C.287, A:C.290 ZN.4: 5 residues within 4Å: Chain A: C.641, H.643, C.644, C.664, C.667 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.641

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 5 residues within 4Å: Chain A: S.112, S.117, R.121, S.143, N.145 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.112, A:S.143, A:N.145 Salt bridges: A:R.121 SO4.6: 4 residues within 4Å: Chain A: G.595, R.596, T.597, S.600 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.596, A:T.597, A:T.597, A:S.600, A:S.600 SO4.7: 1 residues within 4Å: Chain A: M.247 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Timmins, J. et al., Structural and Mutational Analyses of Deinococcus Radiodurans Uvra2 Provide Insight Into DNA Binding and Damage Recognition by Uvras. Structure (2009)

Release Date

2008-12-16

Peptides

EXCINUCLEASE ABC SUBUNIT A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

EXCINUCLEASE ABC SUBUNIT A

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