SMTL ID : 2vh0.1

Structure and property based design of factor Xa inhibitors:biaryl pyrrolidin-2-ones incorporating basic heterocyclic motifs

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.56, N.58, Q.61, E.62, E.66 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.56, A:N.58, A:Q.61, A:E.66, H2O.2

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: Y.173, D.174, A.210, R.211, K.214 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:Y.173, A:D.174, A:R.211, A:K.214, H2O.7, H2O.7

1 x GSI: 2-(5-chlorothiophen-2-yl)-N-[(3S)-1-(4-{2-[(dimethylamino)methyl]-1H-imidazol-1-yl}-2-fluorophenyl)-2-oxopyrrolidin-3-yl]ethanesulfonamide

GSI.3: 17 residues within 4Å: Chain A: K.82, E.83, T.84, Y.85, F.162, D.179, A.180, C.181, Q.182, V.203, W.205, G.206, G.208, C.209, G.216, I.217, Y.218 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:A.180, A:W.205, A:W.205 Hydrogen bonds: A:G.206 pi-Stacking: A:Y.85, A:F.162, A:F.162, A:W.205, A:W.205

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Young, R.J. et al., Structure and property based design of factor Xa inhibitors: biaryl pyrrolidin-2-ones incorporating basic heterocyclic motifs. Bioorg. Med. Chem. Lett. (2008)

Release Date

2008-11-25

Peptides

ACTIVATED FACTOR XA HEAVY CHAIN: A
ACTIVATED FACTOR XA LIGHT CHAIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ACTIVATED FACTOR XA HEAVY CHAIN

ACTIVATED FACTOR XA LIGHT CHAIN

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