SMTL ID : 2vij.1

Human BACE-1 in complex with 3-(1,1-dioxidotetrahydro-2H-1,2-thiazin- 2-yl)-5-(ethylamino)-N-((1S,2R)-2-hydroxy-1-(phenylmethyl)-3-(1,2,3,4- tetrahydro-1-naphthalenylamino)propyl)benzamide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

2 x C44: N-{(1S,2R)-1-benzyl-2-hydroxy-3-[(1S)-1,2,3,4-tetrahydronaphthalen-1-ylamino]propyl}-3-(1,1-dioxido-1,2-thiazinan-2-yl)-5-(ethylamino)benzamide

C44.1: 24 residues within 4Å: Chain A: G.12, Q.13, G.14, L.31, D.33, G.35, S.36, P.71, Y.72, T.73, Q.74, F.109, W.116, I.119, Y.199, I.227, D.229, G.231, T.232, T.233, N.234, R.236, S.326, T.330 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:L.31, A:Y.72, A:Q.74, A:F.109, A:F.109, A:W.116, A:W.116, A:I.119, A:Y.199, A:I.227, A:T.232 Hydrogen bonds: A:G.12, A:D.33, A:T.73, A:T.73, A:Q.74, A:D.229, A:G.231, A:T.232, A:T.233, A:T.233, A:N.234, A:N.234, A:S.326 Water bridges: A:Q.74, A:Q.74 pi-Stacking: A:Y.72 C44.2: 8 residues within 4Å: Chain A: N.210, G.211, N.279, V.283, T.300, F.366, R.367, T.368 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.283, A:T.300, A:F.366, A:R.367 Hydrogen bonds: A:N.210, A:N.210, A:R.367, A:T.368 Water bridges: A:V.283, A:F.366

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Beswick, P. et al., Bace-1 Inhibitors Part 3: Identification of Hydroxy Ethylamines (Heas) with Nanomolar Potency in Cells. Bioorg.Med.Chem.Lett. (2008)

Release Date

2008-01-29

Peptides

BETA-SECRETASE 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BETA-SECRETASE 1

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