SMTL ID : 2vja.1

Torpedo Californica Acetylcholinesterase In Complex With A Non Hydrolysable Substrate Analogue, 4-Oxo-N,N,N- Trimethylpentanaminium - Orthorhombic space group - Dataset A at 100K

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.59, S.61 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.59, A:S.61 Water bridges: A:N.59, A:N.59, A:N.59, A:N.59, A:N.59 NAG.2: 3 residues within 4Å: Chain A: G.415, N.416, L.494 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.494 Hydrogen bonds: A:N.416 Water bridges: A:N.416, A:N.416 NAG.10: 3 residues within 4Å: Chain B: N.59, S.61, T.62 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.59, B:S.61 NAG.11: 1 residues within 4Å: Chain B: N.416 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.416 Water bridges: B:N.416, B:N.416

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: K.133, Y.134 Ligand excluded by PLIP CL.4: 1 residues within 4Å: Chain A: T.497 Ligand excluded by PLIP CL.8: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.12: 2 residues within 4Å: Chain B: N.409, N.525 Ligand excluded by PLIP

4 x CCD: (4R)-4-HYDROXY-N,N,N-TRIMETHYLPENTAN-1-AMINIUM(Covalent)(Non-covalent)

CCD.5: 10 residues within 4Å: Chain A: W.84, G.117, G.118, G.119, E.199, S.200, A.201, F.288, F.290, H.440 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.288, A:F.290 Hydrogen bonds: A:G.118, A:G.119, A:A.201 Water bridges: A:G.117 Salt bridges: A:E.199 pi-Cation interactions: A:W.84 CCD.6: 5 residues within 4Å: Chain A: Y.70, Y.121, W.279, F.330, Y.334 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.279, A:F.330, A:Y.334 Hydrogen bonds: A:Y.121 Water bridges: A:Y.121, A:Y.121 pi-Cation interactions: A:W.279, A:W.279 CCD.13: 12 residues within 4Å: Chain B: W.84, G.117, G.118, G.119, E.199, S.200, A.201, W.233, F.288, F.290, H.440, G.441 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:W.233, B:F.288, B:F.290 Hydrogen bonds: B:G.118, B:G.119, B:A.201 Salt bridges: B:E.199 pi-Cation interactions: B:W.84, B:W.84, B:F.330 CCD.14: 4 residues within 4Å: Chain B: Y.70, Y.121, W.279, Y.334 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:W.279, B:W.279 Water bridges: B:Y.121 pi-Cation interactions: B:W.279, B:W.279

3 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.7: 4 residues within 4Å: Chain A: V.238, I.296, D.297, G.298 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.304 PGE.9: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) PGE.15: 4 residues within 4Å: Chain B: W.54, S.55, G.56, V.57 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:V.57 Water bridges: B:S.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Colletier, J.P. et al., Shoot-and-Trap: Use of Specific X-Ray Damage to Study Structural Protein Dynamics by Temperature-Controlled Cryo-Crystallography. Proc.Natl.Acad.Sci.USA (2008)

Release Date

2008-07-22

Peptides

ACETYLCHOLINESTERASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ACETYLCHOLINESTERASE

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