- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NTJ: R-ETHYL N,N-DIMETHYLPHOSPHONAMIDATE(Covalent)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.2: 1 residues within 4Å:- Chain A: N.416
2 PLIP interactions:2 interactions with chain A- Water bridges: A:N.416, A:N.416
NAG.3: 3 residues within 4Å:- Chain A: N.59, S.61, T.62
No protein-ligand interaction detected (PLIP)NAG.14: 1 residues within 4Å:- Chain B: N.416
2 PLIP interactions:2 interactions with chain B- Water bridges: B:N.416, B:N.416
NAG.15: 3 residues within 4Å:- Chain B: N.59, S.61, T.62
No protein-ligand interaction detected (PLIP)- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 4 residues within 4Å:- Chain A: R.220, R.221, T.317, Q.318
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.220, A:R.220, A:R.221, A:Q.318
EDO.6: 5 residues within 4Å:- Chain A: Y.121, F.330, F.331, Y.334
- Ligands: PEG.10
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:F.330
- Water bridges: A:Y.121
EDO.7: 4 residues within 4Å:- Chain A: R.44, R.267, E.268, K.269
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.44
- Water bridges: A:R.44, A:E.92
EDO.16: 4 residues within 4Å:- Chain B: R.220, R.221, T.317, Q.318
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:R.220, B:R.220, B:R.221, B:T.317, B:Q.318
EDO.18: 5 residues within 4Å:- Chain B: Y.121, F.330, F.331, Y.334
- Ligands: PEG.22
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:F.330
- Water bridges: B:Y.121
EDO.19: 4 residues within 4Å:- Chain B: R.44, R.267, E.268, K.269
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.44
- Water bridges: B:R.44, B:E.92
- 2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
PGE.5: 3 residues within 4Å:- Chain A: Y.70, Y.121, W.279
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.121
- Water bridges: A:Y.121, A:D.276
PGE.17: 3 residues within 4Å:- Chain B: Y.70, Y.121, W.279
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:Y.121
- Water bridges: B:Y.70, B:Y.121, B:D.276
- 10 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.8: 6 residues within 4Å:- Chain A: T.10, K.11, G.13, P.53, W.54
- Ligands: PEG.11
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:W.54
PEG.9: 6 residues within 4Å:- Chain A: R.105, P.106, K.107, Q.185, F.186, G.188
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.105, A:K.107, A:K.107
PEG.10: 9 residues within 4Å:- Chain A: W.84, G.117, G.118, E.199, S.200, F.330, H.440
- Ligands: NTJ.1, EDO.6
1 PLIP interactions:1 interactions with chain A- Water bridges: A:G.117
PEG.11: 4 residues within 4Å:- Chain A: N.9, T.10, F.186
- Ligands: PEG.8
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.9
PEG.12: 4 residues within 4Å:- Chain A: F.422, D.504, H.513, L.516
3 PLIP interactions:3 interactions with chain A- Water bridges: A:N.424, A:N.424, A:R.517
PEG.20: 6 residues within 4Å:- Chain B: T.10, K.11, G.13, P.53, W.54
- Ligands: PEG.23
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:W.54
PEG.21: 6 residues within 4Å:- Chain B: R.105, P.106, K.107, Q.185, F.186, G.188
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.105, B:K.107, B:K.107
PEG.22: 9 residues within 4Å:- Chain B: W.84, G.117, G.118, E.199, S.200, F.330, H.440
- Ligands: NTJ.13, EDO.18
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.200
- Water bridges: B:G.117
PEG.23: 4 residues within 4Å:- Chain B: N.9, T.10, F.186
- Ligands: PEG.20
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.9
PEG.24: 4 residues within 4Å:- Chain B: F.422, D.504, H.513, L.516
3 PLIP interactions:3 interactions with chain B- Water bridges: B:N.424, B:N.424, B:R.517
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Santoni, G. et al., Structure-Based Optimization of Nonquaternary Reactivators of Acetylcholinesterase Inhibited by Organophosphorus Nerve Agents. J. Med. Chem. (2018)
- Release Date
- 2018-08-29
- Peptides
- Acetylcholinesterase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NTJ: R-ETHYL N,N-DIMETHYLPHOSPHONAMIDATE(Covalent)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 10 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Santoni, G. et al., Structure-Based Optimization of Nonquaternary Reactivators of Acetylcholinesterase Inhibited by Organophosphorus Nerve Agents. J. Med. Chem. (2018)
- Release Date
- 2018-08-29
- Peptides
- Acetylcholinesterase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A