SMTL ID : 2vt7.1

Native Torpedo californica acetylcholinesterase collected with a cumulated dose of 800000 Gy

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.59, S.61 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.59, A:S.61 NAG.2: 1 residues within 4Å: Chain A: N.416 3 PLIP interactions: 3 interactions with chain A Water bridges: A:Q.318, A:N.416, A:N.416 NAG.8: 2 residues within 4Å: Chain B: N.59, S.61 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.59, B:S.61 NAG.9: 2 residues within 4Å: Chain B: N.416 Ligands: PGE.14 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.416 Water bridges: B:N.416

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: L.23, K.133 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain B: K.133, Y.134 Ligand excluded by PLIP

8 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.4: 7 residues within 4Å: Chain A: Y.70, Y.121, W.279, F.330, F.331, Y.334 Ligands: PGE.5 No protein-ligand interaction detected (PLIP) PGE.5: 11 residues within 4Å: Chain A: W.84, G.117, G.118, G.119, Y.121, Y.130, E.199, F.290, F.331, H.440 Ligands: PGE.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.130 Water bridges: A:G.117, A:G.119, A:S.122 PGE.6: 6 residues within 4Å: Chain A: K.346, S.348, N.382, N.383, G.384, I.385 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.384, A:I.385 PGE.7: 1 residues within 4Å: Chain A: V.238 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.304 PGE.11: 5 residues within 4Å: Chain B: Y.70, Y.121, W.279, F.330 Ligands: PGE.12 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.121 PGE.12: 10 residues within 4Å: Chain B: W.84, G.117, G.118, Y.121, E.199, S.200, F.330, F.331, H.440 Ligands: PGE.11 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.121, B:Y.121 Water bridges: B:S.200, B:A.201 PGE.13: 5 residues within 4Å: Chain B: G.41, N.42, H.264, R.267, E.268 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.267 Water bridges: B:H.264 PGE.14: 7 residues within 4Å: Chain B: T.412, K.413, F.414, G.415, T.496, T.497 Ligands: NAG.9 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:F.414, B:T.497 Water bridges: B:T.496, B:K.498

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Colletier, J.P. et al., Shoot-and-Trap: Use of Specific X-Ray Damage to Study Structural Protein Dynamics by Temperature-Controlled Cryo-Crystallography. Proc.Natl.Acad.Sci.USA (2008)

Release Date

2008-07-22

Peptides

ACETYLCHOLINESTERASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ACETYLCHOLINESTERASE

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