SMTL ID : 2wfz.1

NON-AGED CONJUGATE OF TORPEDO CALIFORNICA ACETYLCHOLINESTERASE WITH SOMAN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain A: N.416, L.494 No protein-ligand interaction detected (PLIP)

1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.2: 4 residues within 4Å: Chain A: N.59, S.61, T.62 Ligands: PEG.11 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.59, A:S.61

2 x GD8: (1R)-1,2,2-TRIMETHYLPROPYL (S)-METHYLPHOSPHINATE(Covalent)

GD8.3: 14 residues within 4Å: Chain A: W.84, G.117, G.118, G.119, E.199, S.200, A.201, F.288, F.290, F.330, F.331, H.440, G.441 Ligands: PG4.10 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.84, A:F.330 Hydrogen bonds: A:G.118, A:G.119, A:A.201 GD8.13: 14 residues within 4Å: Chain B: W.84, G.117, G.118, G.119, E.199, S.200, A.201, F.288, F.290, F.330, F.331, H.440, G.441 Ligands: PG4.20 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:W.84, B:F.330 Hydrogen bonds: B:G.118, B:G.119, B:A.201

4 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.4: 8 residues within 4Å: Chain A: L.332, L.333, Y.334, G.335, A.336, P.337, G.338, F.339 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.336, A:F.339 Water bridges: A:L.333, A:G.338 TRS.5: 6 residues within 4Å: Chain A: P.451, K.454, Y.458, T.459, A.460, E.463 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.458, A:E.463 Water bridges: A:N.457, A:N.457 TRS.14: 8 residues within 4Å: Chain B: L.332, L.333, Y.334, G.335, A.336, P.337, G.338, F.339 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:A.336, B:F.339 Water bridges: B:L.333, B:G.338 TRS.15: 6 residues within 4Å: Chain B: P.451, K.454, Y.458, T.459, A.460, E.463 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.458 Water bridges: B:N.457, B:N.457

10 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.6: 5 residues within 4Å: Chain A: S.4, E.5, R.105, K.107 Ligands: PG4.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.105 Water bridges: A:K.107 PG4.7: 5 residues within 4Å: Chain A: N.9, T.10, K.11, F.186 Ligands: PG4.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.9 PG4.8: 5 residues within 4Å: Chain A: H.159, V.238, I.296, D.297, G.298 No protein-ligand interaction detected (PLIP) PG4.9: 6 residues within 4Å: Chain A: F.422, N.424, F.502, H.513, L.516, R.517 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.517 Water bridges: A:N.424, A:D.504 PG4.10: 7 residues within 4Å: Chain A: Y.70, Y.121, W.279, F.330, F.331, Y.334 Ligands: GD8.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.121 PG4.16: 5 residues within 4Å: Chain B: S.4, E.5, R.105, K.107 Ligands: PG4.17 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.105 Water bridges: B:K.107 PG4.17: 5 residues within 4Å: Chain B: N.9, T.10, K.11, F.186 Ligands: PG4.16 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.9 PG4.18: 5 residues within 4Å: Chain B: H.159, V.238, I.296, D.297, G.298 No protein-ligand interaction detected (PLIP) PG4.19: 6 residues within 4Å: Chain B: F.422, N.424, F.502, H.513, L.516, R.517 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.517 Water bridges: B:N.424, B:N.424 PG4.20: 7 residues within 4Å: Chain B: Y.70, Y.121, W.279, F.330, F.331, Y.334 Ligands: GD8.13 3 PLIP interactions: 3 interactions with chain B Water bridges: B:D.72, B:Y.121, B:Y.121

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.11: 5 residues within 4Å: Chain A: V.57, W.58, N.59, T.62 Ligands: NAG-FUC.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.57, A:N.59 Water bridges: A:N.59, A:N.59, A:T.62 PEG.21: 4 residues within 4Å: Chain B: V.57, W.58, N.59, T.62 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:V.57, B:N.59 Water bridges: B:N.59, B:N.59, B:T.62

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.12: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.22: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sanson, B. et al., Crystallographic Snapshots of Nonaged and Aged Conjugates of Soman with Acetylcholinesterase, and of a Ternary Complex of the Aged Conjugate with Pralidoxime. J.Med.Chem. (2009)

Release Date

2009-08-11

Peptides

ACETYLCHOLINESTERASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

ACETYLCHOLINESTERASE

Related Entries With Identical Sequence