- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- monomer
- Ligands
- 1 x VBZ: (1R,4R,5R,7R,8R)-2-Benzyl-5-hydroxymethyl-2-aza-bicyclo[2.2.2]octane-4,7,8-triol
- 19 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.2: 4 residues within 4Å:- Chain A: W.494, W.508, Y.512
- Ligands: VBZ.1
Ligand excluded by PLIPEDO.3: 4 residues within 4Å:- Chain A: Q.205, R.306, D.481, R.482
Ligand excluded by PLIPEDO.4: 3 residues within 4Å:- Chain A: R.351, Y.636, Y.637
Ligand excluded by PLIPEDO.5: 8 residues within 4Å:- Chain A: I.303, G.304, R.306, R.424, N.425, H.426, A.427, R.482
Ligand excluded by PLIPEDO.6: 3 residues within 4Å:- Chain A: Y.322, P.612, M.615
Ligand excluded by PLIPEDO.7: 6 residues within 4Å:- Chain A: Q.340, N.623, D.624, I.634, D.635, Y.636
Ligand excluded by PLIPEDO.8: 3 residues within 4Å:- Chain A: L.101, L.102, K.104
Ligand excluded by PLIPEDO.9: 6 residues within 4Å:- Chain A: H.301, R.302, D.382, D.385, N.425, H.426
Ligand excluded by PLIPEDO.10: 4 residues within 4Å:- Chain A: I.135, L.139, H.156, K.158
Ligand excluded by PLIPEDO.11: 8 residues within 4Å:- Chain A: W.494, W.500, S.505, N.507, D.523, L.524, P.525, M.528
Ligand excluded by PLIPEDO.12: 8 residues within 4Å:- Chain A: S.18, Q.19, S.20, G.21, T.22, E.23, E.65, Y.128
Ligand excluded by PLIPEDO.13: 9 residues within 4Å:- Chain A: L.439, E.440, K.443, Y.444, P.489, Y.490, L.491, A.492, N.493
Ligand excluded by PLIPEDO.14: 7 residues within 4Å:- Chain A: F.17, S.18, Q.19, T.22, K.24, M.26, L.43
Ligand excluded by PLIPEDO.15: 5 residues within 4Å:- Chain A: P.658, S.747, V.748, H.749
- Ligands: CL.20
Ligand excluded by PLIPEDO.16: 3 residues within 4Å:- Chain A: N.312, H.486, Y.490
Ligand excluded by PLIPEDO.22: 6 residues within 4Å:- Chain A: Q.552, I.553, R.572, P.582, E.583, F.585
Ligand excluded by PLIPEDO.23: 3 residues within 4Å:- Chain A: E.836, Y.838, K.839
Ligand excluded by PLIPEDO.24: 3 residues within 4Å:- Chain A: E.23, W.25, R.67
Ligand excluded by PLIPEDO.25: 8 residues within 4Å:- Chain A: F.331, R.608, R.611, I.670, S.671, D.672, N.708, T.709
Ligand excluded by PLIP- 4 x BR: BROMIDE ION(Non-covalent)(Non-functional Binders)
BR.17: 3 residues within 4Å:- Chain A: I.82, P.115, K.117
Ligand excluded by PLIPBR.18: 3 residues within 4Å:- Chain A: Q.660, N.662, D.663
Ligand excluded by PLIPBR.26: 3 residues within 4Å:- Chain A: N.275, W.277, N.365
Ligand excluded by PLIPBR.27: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIP- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.19: 2 residues within 4Å:- Chain A: Q.83, P.115
Ligand excluded by PLIPCL.20: 5 residues within 4Å:- Chain A: H.602, I.659, Q.660, H.749
- Ligands: EDO.15
Ligand excluded by PLIPCL.21: 3 residues within 4Å:- Chain A: F.451, T.452, V.455
Ligand excluded by PLIPCL.28: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tailford, L.E. et al., Structural and Biochemical Evidence for a Boat-Like Transition State in Beta-Mannosidases. Nat.Chem.Biol. (2008)
- Release Date
- 2008-04-01
- Peptides
- BETA-MANNOSIDASE: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- monomer
- Ligands
- 1 x VBZ: (1R,4R,5R,7R,8R)-2-Benzyl-5-hydroxymethyl-2-aza-bicyclo[2.2.2]octane-4,7,8-triol
- 19 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 4 x BR: BROMIDE ION(Non-covalent)(Non-functional Binders)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tailford, L.E. et al., Structural and Biochemical Evidence for a Boat-Like Transition State in Beta-Mannosidases. Nat.Chem.Biol. (2008)
- Release Date
- 2008-04-01
- Peptides
- BETA-MANNOSIDASE: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B