- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- monomer
- Ligands
- 1 x NHV: (5R,6R,7S,8R)-6,7,8-trihydroxy-5-(hydroxymethyl)-2-[(phenylamino)methyl]-5,6,7,8-tetrahydro-1H-imidazo[1,2-a]pyridin-4-ium
- 27 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.2: 8 residues within 4Å:- Chain A: W.494, W.500, S.505, N.507, D.523, L.524, P.525, M.528
Ligand excluded by PLIPEDO.3: 5 residues within 4Å:- Chain A: N.312, V.485, H.486, Y.490
- Ligands: EDO.35
Ligand excluded by PLIPEDO.4: 5 residues within 4Å:- Chain A: D.63, H.132, R.136, Q.137
- Ligands: EDO.20
Ligand excluded by PLIPEDO.5: 3 residues within 4Å:- Chain A: L.101, L.102, K.104
Ligand excluded by PLIPEDO.6: 8 residues within 4Å:- Chain A: S.18, Q.19, S.20, G.21, T.22, E.23, W.25, E.65
Ligand excluded by PLIPEDO.7: 3 residues within 4Å:- Chain A: R.351, Y.636, Y.637
Ligand excluded by PLIPEDO.8: 4 residues within 4Å:- Chain A: Q.205, R.306, D.481, R.482
Ligand excluded by PLIPEDO.9: 8 residues within 4Å:- Chain A: Q.340, L.355, N.623, D.624, I.634, D.635, Y.636
- Ligands: EDO.34
Ligand excluded by PLIPEDO.10: 7 residues within 4Å:- Chain A: N.153, W.173, D.174, C.399, E.437, W.445
- Ligands: NHV.1
Ligand excluded by PLIPEDO.11: 4 residues within 4Å:- Chain A: Q.598, H.749, F.750
- Ligands: EDO.15
Ligand excluded by PLIPEDO.12: 5 residues within 4Å:- Chain A: E.440, W.445, W.494
- Ligands: NHV.1, EDO.19
Ligand excluded by PLIPEDO.13: 8 residues within 4Å:- Chain A: F.331, R.608, R.611, I.670, S.671, D.672, N.708, T.709
Ligand excluded by PLIPEDO.14: 8 residues within 4Å:- Chain A: I.303, G.304, R.306, R.424, N.425, H.426, A.427, R.482
Ligand excluded by PLIPEDO.15: 8 residues within 4Å:- Chain A: Q.660, H.749, F.750, F.751, R.752, K.753
- Ligands: EDO.11, CL.27
Ligand excluded by PLIPEDO.16: 7 residues within 4Å:- Chain A: F.17, S.18, Q.19, T.22, K.24, L.38, L.43
Ligand excluded by PLIPEDO.17: 7 residues within 4Å:- Chain A: N.275, W.277, M.330, F.331, K.333, N.365, D.672
Ligand excluded by PLIPEDO.18: 7 residues within 4Å:- Chain A: R.357, R.798, Y.799, S.800, I.815, T.817
- Ligands: EDO.30
Ligand excluded by PLIPEDO.19: 6 residues within 4Å:- Chain A: E.440, Y.444, W.445, N.493, W.494
- Ligands: EDO.12
Ligand excluded by PLIPEDO.20: 4 residues within 4Å:- Chain A: R.136, Q.137, P.140
- Ligands: EDO.4
Ligand excluded by PLIPEDO.21: 6 residues within 4Å:- Chain A: H.301, R.302, D.382, D.385, N.425, H.426
Ligand excluded by PLIPEDO.22: 3 residues within 4Å:- Chain A: P.516, R.577, K.753
Ligand excluded by PLIPEDO.28: 4 residues within 4Å:- Chain A: Y.322, P.612, M.615
- Ligands: EDO.33
Ligand excluded by PLIPEDO.30: 5 residues within 4Å:- Chain A: W.640, Y.645, R.798, Y.799
- Ligands: EDO.18
Ligand excluded by PLIPEDO.31: 8 residues within 4Å:- Chain A: Y.169, G.172, W.173, W.175, G.176, I.177, A.342, S.625
Ligand excluded by PLIPEDO.33: 7 residues within 4Å:- Chain A: D.315, K.316, D.317, R.526, P.612, Y.613
- Ligands: EDO.28
Ligand excluded by PLIPEDO.34: 7 residues within 4Å:- Chain A: Q.340, R.351, T.354, L.355, D.358, G.638
- Ligands: EDO.9
Ligand excluded by PLIPEDO.35: 5 residues within 4Å:- Chain A: N.312, E.313, K.314, E.319
- Ligands: EDO.3
Ligand excluded by PLIP- 3 x BR: BROMIDE ION(Non-covalent)
- 5 x CL: CHLORIDE ION(Non-functional Binders)
CL.26: 2 residues within 4Å:- Chain A: Q.83, P.115
Ligand excluded by PLIPCL.27: 4 residues within 4Å:- Chain A: I.659, Q.660, H.749
- Ligands: EDO.15
Ligand excluded by PLIPCL.29: 2 residues within 4Å:- Chain A: Q.205, S.207
Ligand excluded by PLIPCL.32: 4 residues within 4Å:- Chain A: M.273, P.274, W.277, N.326
Ligand excluded by PLIPCL.36: 1 residues within 4Å:- Chain A: R.422
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tailford, L.E. et al., Structural and Biochemical Evidence for a Boat-Like Transition State in Beta-Mannosidases. Nat.Chem.Biol. (2008)
- Release Date
- 2008-04-01
- Peptides
- BETA-MANNOSIDASE: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- monomer
- Ligands
- 1 x NHV: (5R,6R,7S,8R)-6,7,8-trihydroxy-5-(hydroxymethyl)-2-[(phenylamino)methyl]-5,6,7,8-tetrahydro-1H-imidazo[1,2-a]pyridin-4-ium
- 27 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 3 x BR: BROMIDE ION(Non-covalent)
- 5 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tailford, L.E. et al., Structural and Biochemical Evidence for a Boat-Like Transition State in Beta-Mannosidases. Nat.Chem.Biol. (2008)
- Release Date
- 2008-04-01
- Peptides
- BETA-MANNOSIDASE: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B