SMTL ID : 2vwx.1

ephB4 kinase domain inhibitor complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x 7X4: 3-({4-[(5-chloro-1,3-benzodioxol-4-yl)amino]pyrimidin-2-yl}amino)benzenesulfonamide

7X4.1: 15 residues within 4Å: Chain A: I.24, A.48, I.49, K.50, E.67, I.94, T.96, E.97, F.98, M.99, E.100, N.101, G.102, L.150, S.160 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.24, A:A.48, A:K.50, A:F.98, A:L.150 Hydrogen bonds: A:K.50, A:M.99, A:M.99, A:N.101

4 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.2: 5 residues within 4Å: Chain A: D.143, N.148, D.161 Ligands: MG.3, MG.4 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.143, A:D.161, H2O.5, H2O.6, H2O.6, H2O.6 MG.3: 3 residues within 4Å: Chain A: D.143, D.161 Ligands: MG.2 No protein-ligand interaction detected (PLIP) MG.4: 2 residues within 4Å: Chain A: E.28 Ligands: MG.2 No protein-ligand interaction detected (PLIP) MG.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bardelle, C. et al., Inhibitors of the Tyrosine Kinase Ephb4. Part 2: Structure-Based Discovery and Optimisation of 3,5-Bis Substituted Anilinopyrimidines. Bioorg.Med.Chem.Lett. (2008)

Release Date

2008-10-28

Peptides

EPHRIN TYPE-B RECEPTOR 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

EPHRIN TYPE-B RECEPTOR 4

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