SMTL ID : 2w3k.1

Crystal Structure of FXa in complex with 4,4-disubstituted pyrrolidine-1,2-dicarboxamide inhibitor 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

hetero-1-1-mer

Ligands

1 x L1D: (2R,4S)-N^1^-(4-chlorophenyl)-N^2^-[2-fluoro-4-(2-oxopyridin-1(2H)-yl)phenyl]-4-hydroxy-4-phenylpyrrolidine-1,2-dicarboxamide

L1D.1: 20 residues within 4Å: Chain A: K.82, E.83, T.84, Y.85, R.132, E.135, F.162, D.179, A.180, C.181, Q.182, V.203, W.205, G.206, E.207, G.208, C.209, G.216, I.217, Y.218 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:Y.85, A:E.135, A:F.162, A:F.162, A:V.203, A:W.205, A:W.205 Hydrogen bonds: A:G.206, A:G.206, A:G.208, A:G.208 pi-Stacking: A:Y.85, A:Y.85, A:F.162, A:W.205, A:W.205

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: D.56, N.58, Q.61, E.66 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.56, A:N.58, A:Q.61, A:E.66, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Van Huis, C.A. et al., Exploration of 4,4-Disubstituted Pyrrolidine-1,2-Dicarboxamides as Potent, Orally Active Factor Xa Inhibitors with Extended Duration of Action. Bioorg.Med.Chem. (2009)

Release Date

2009-04-07

Peptides

COAGULATION FACTOR X, HEAVY CHAIN: A
COAGULATION FACTOR X, LIGHT CHAIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

COAGULATION FACTOR X, HEAVY CHAIN

COAGULATION FACTOR X, LIGHT CHAIN

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