SMTL ID : 2wb1.2 (1 other biounit)

The complete structure of the archaeal 13-subunit DNA-directed RNA Polymerase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.52 Å

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

5 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain D: C.7, T.9, C.10, C.44, C.45 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.7, D:C.10, D:C.44, D:C.45 ZN.2: 4 residues within 4Å: Chain E: C.1064, C.1067, C.1082, I.1084 1 PLIP interactions: 1 interactions with chain E Metal complexes: E:C.1082 ZN.4: 6 residues within 4Å: Chain J: G.50, C.58, T.60, C.61, C.68, H.71 3 PLIP interactions: 3 interactions with chain J Metal complexes: J:C.58, J:C.68, J:H.71 ZN.5: 5 residues within 4Å: Chain J: C.98, C.101, Q.144, V.145, C.146 2 PLIP interactions: 2 interactions with chain J Metal complexes: J:C.98, J:C.146 ZN.7: 4 residues within 4Å: Chain K: C.9, T.12, C.26, C.29 3 PLIP interactions: 3 interactions with chain K Metal complexes: K:C.9, K:T.12, K:C.29

1 x F3S: FE3-S4 CLUSTER(Non-covalent)

F3S.3: 11 residues within 4Å: Chain F: C.183, P.184, V.187, F.188, C.203, T.204, L.205, C.206, E.207, C.209, I.219 3 PLIP interactions: 3 interactions with chain F, Metal complexes: F:C.203, F:C.206, F:C.209

1 x MG: MAGNESIUM ION(Non-covalent)

MG.6: 3 residues within 4Å: Chain J: D.456, D.458, D.460 3 PLIP interactions: 3 interactions with chain J Metal complexes: J:D.456, J:D.458, J:D.460

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Korkhin, Y. et al., Evolution of Complex RNA Polymerase: The Complete Archaeal RNA Polymerase Structure. Plos Biol. (2009)

Release Date

2009-05-19

Peptides

DNA-DIRECTED RNA POLYMERASE RPO6 SUBUNIT: A
DNA-DIRECTED RNA POLYMERASE RPO13 SUBUNIT: B
DNA-DIRECTED RNA POLYMERASE RPO11 SUBUNIT: C
DNA-DIRECTED RNA POLYMERASE RPO10 SUBUNIT: D
DNA-DIRECTED RNA POLYMERASE RPO2 SUBUNIT: E
DNA-DIRECTED RNA POLYMERASERPO3 SUBUNIT: F
DNA-DIRECTED RNA POLYMERASE RPO7 SUBUNIT: G
DNA-DIRECTED RNA POLYMERASE RPO4 SUBUNIT: H
DNA-DIRECTED RNA POLYMERASE RPO8 SUBUNIT: I
DNA-DIRECTED RNA POLYMERASE RPO1N SUBUNIT: J
DNA-DIRECTED RNA POLYMERASE RPO12 SUBUNIT: K
DNA-DIRECTED RNA POLYMERASE RPO1C SUBUNIT: L
DNA-DIRECTED RNA POLYMERASE RPO5 SUBUNIT: M

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

B
J

C
M

D
O

E
R

F
S

G
T

H
U

I
V

J
W

K
X

L
Y

M
Z

DNA-DIRECTED RNA POLYMERASE RPO6 SUBUNIT

DNA-DIRECTED RNA POLYMERASE RPO13 SUBUNIT

DNA-DIRECTED RNA POLYMERASE RPO11 SUBUNIT

DNA-DIRECTED RNA POLYMERASE RPO10 SUBUNIT

DNA-DIRECTED RNA POLYMERASE RPO2 SUBUNIT

DNA-DIRECTED RNA POLYMERASERPO3 SUBUNIT

DNA-DIRECTED RNA POLYMERASE RPO7 SUBUNIT

DNA-DIRECTED RNA POLYMERASE RPO4 SUBUNIT

DNA-DIRECTED RNA POLYMERASE RPO8 SUBUNIT

DNA-DIRECTED RNA POLYMERASE RPO1N SUBUNIT

DNA-DIRECTED RNA POLYMERASE RPO12 SUBUNIT

DNA-DIRECTED RNA POLYMERASE RPO1C SUBUNIT

DNA-DIRECTED RNA POLYMERASE RPO5 SUBUNIT

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