SMTL ID : 2y0s.1 (1 other biounit)

Crystal structure of Sulfolobus shibatae RNA polymerase in P21 space group

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.80 Å

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

7 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain C: C.7, C.10, C.44, C.45 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.7, C:C.10, C:C.44, C:C.45 ZN.2: 5 residues within 4Å: Chain E: C.1064, C.1067, C.1082, I.1084, S.1089 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:C.1064, E:C.1067 ZN.3: 3 residues within 4Å: Chain E: H.570, N.572, E.622 1 PLIP interactions: 1 interactions with chain E Metal complexes: E:H.570 ZN.4: 2 residues within 4Å: Chain E: D.418, T.420 No protein-ligand interaction detected (PLIP) ZN.6: 5 residues within 4Å: Chain J: C.58, T.60, C.61, C.68, H.71 5 PLIP interactions: 5 interactions with chain J Metal complexes: J:C.58, J:C.61, J:C.68, J:C.68, J:H.71 ZN.7: 4 residues within 4Å: Chain J: C.98, C.101, V.145, C.146 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.98, J:C.101, J:V.145, J:C.146 ZN.9: 4 residues within 4Å: Chain K: C.9, T.12, C.26, C.29 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.9, K:T.12, K:C.26, K:C.29

1 x F3S: FE3-S4 CLUSTER(Covalent)

F3S.5: 11 residues within 4Å: Chain F: C.183, P.184, E.185, V.187, C.203, T.204, L.205, C.206, E.207, C.209, I.219 3 PLIP interactions: 3 interactions with chain F, Metal complexes: F:C.203, F:C.206, F:C.209

1 x MG: MAGNESIUM ION(Non-covalent)

MG.8: 3 residues within 4Å: Chain J: D.456, D.458, D.460 5 PLIP interactions: 5 interactions with chain J Metal complexes: J:D.456, J:D.456, J:D.458, J:D.458, J:D.460

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wojtas, M. et al., Archaeal RNA polymerase: the influence of the protruding stalk in crystal packing and preliminary biophysical analysis of the Rpo13 subunit. Biochem. Soc. Trans. (2011)

Release Date

2011-02-16

Peptides

DNA-DIRECTED RNA POLYMERASE SUBUNIT K: A
DNA-DIRECTED RNA POLYMERASE SUBUNIT L: B
DNA-DIRECTED RNA POLYMERASE SUBUNIT N: C
RNA POLYMERASE SUBUNIT 13: D
DNA-DIRECTED RNA POLYMERASE: E
DNA-DIRECTED RNA POLYMERASE SUBUNIT D: F
RNA POLYMERASE SUBUNIT 4: G
RNA POLYMERASE SUBUNIT 7: H
RNA POLYMERASE SUBUNIT 8: I
DNA-DIRECTED RNA POLYMERASE: J
RNA POLYMERASE SUBUNIT 12: K
DNA-DIRECTED RNA POLYMERASE SUBUNIT A'': L
DNA-DIRECTED RNA POLYMERASE SUBUNIT H: M

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
K

B
M

C
O

D
Q

E
R

F
S

G
T

H
U

I
V

J
W

K
X

L
Y

M
Z

DNA-DIRECTED RNA POLYMERASE SUBUNIT K

DNA-DIRECTED RNA POLYMERASE SUBUNIT L

DNA-DIRECTED RNA POLYMERASE SUBUNIT N

RNA POLYMERASE SUBUNIT 13

DNA-DIRECTED RNA POLYMERASE

DNA-DIRECTED RNA POLYMERASE SUBUNIT D

RNA POLYMERASE SUBUNIT 4

RNA POLYMERASE SUBUNIT 7

RNA POLYMERASE SUBUNIT 8

DNA-DIRECTED RNA POLYMERASE

RNA POLYMERASE SUBUNIT 12

DNA-DIRECTED RNA POLYMERASE SUBUNIT A''

DNA-DIRECTED RNA POLYMERASE SUBUNIT H

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