SMTL ID : 2wl0.1

HIV-1 Protease Inhibitors Containing a Tertiary Alcohol in the Transition-State Mimic with Improved Cell-Based Antiviral Activity

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

1 x 5AH: METHYL [(1S)-1-({2-[(3S)-3-BENZYL-3-HYDROXY-4-{[(1S,2R)-2-HYDROXY-2,3-DIHYDRO-1H-INDEN-1-YL]AMINO}-4-OXOBUTYL]-2-(4-PYRIDIN-2-YLBENZYL)HYDRAZINO}CARBONYL)-2,2-DIMETHYLPROPYL]CARBAMATE(Non-covalent)

5AH.1: 27 residues within 4Å: Chain A: R.8, D.25, G.27, A.28, D.29, D.30, V.32, G.48, G.49, I.50, P.81, T.82, V.84 Chain B: L.23, D.25, G.27, A.28, D.29, D.30, I.47, G.48, G.49, I.50, F.53, P.81, T.82, V.84 31 PLIP interactions: 15 interactions with chain A, 16 interactions with chain B Hydrophobic interactions: A:A.28, A:D.29, A:D.30, A:V.32, A:P.81, A:P.81, A:T.82, A:V.84, B:L.23, B:A.28, B:I.47, B:I.50, B:I.50, B:F.53, B:P.81, B:T.82, B:V.84 Hydrogen bonds: A:G.27, A:G.27, A:D.29, A:I.50, B:D.25, B:G.27, B:D.29, B:G.48 Water bridges: A:R.8, A:R.8, B:I.50, B:I.50 Salt bridges: A:D.25, B:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mahalingam, A.K. et al., HIV-1 Protease Inhibitors with a Transition-State Mimic Comprising a Tertiary Alcohol: Improved Antiviral Activity in Cells. J.Med.Chem. (2010)

Release Date

2009-12-15

Peptides

PROTEASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PROTEASE

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