SMTL ID : 2wl3.1 (1 other biounit)

CRYSTAL STRUCTURE OF CATECHOL 2,3-DIOXYGENASE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-octamer

Ligands

8 x FE: FE (III) ION(Non-covalent)

FE.1: 4 residues within 4Å: Chain A: H.149, H.212, Y.253, E.263 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.149, A:H.212, A:E.263, H2O.48 FE.3: 4 residues within 4Å: Chain B: H.149, H.212, Y.253, E.263 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.149, B:H.212, B:E.263 FE.5: 4 residues within 4Å: Chain C: H.149, H.212, Y.253, E.263 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.149, C:H.212, C:E.263, H2O.160 FE.7: 4 residues within 4Å: Chain D: H.149, H.212, Y.253, E.263 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:H.149, D:H.212, D:E.263 FE.9: 4 residues within 4Å: Chain E: H.149, H.212, Y.253, E.263 4 PLIP interactions: 3 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:H.149, E:H.212, E:E.263, H2O.272 FE.11: 4 residues within 4Å: Chain F: H.149, H.212, Y.253, E.263 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:H.149, F:H.212, F:E.263 FE.13: 4 residues within 4Å: Chain G: H.149, H.212, Y.253, E.263 4 PLIP interactions: 3 interactions with chain G, 1 Ligand-Water interactions Metal complexes: G:H.149, G:H.212, G:E.263, H2O.384 FE.15: 4 residues within 4Å: Chain H: H.149, H.212, Y.253, E.263 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:H.149, H:H.212, H:E.263

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: D.94, A.98 Chain C: K.176, V.184 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.176 GOL.4: 5 residues within 4Å: Chain B: D.94, V.102, L.103 Chain F: K.176, V.184 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain B Hydrogen bonds: F:K.176, B:L.103 GOL.6: 4 residues within 4Å: Chain C: D.94, A.98 Chain G: K.176, V.184 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:K.176 GOL.8: 5 residues within 4Å: Chain B: K.176, V.184 Chain D: D.94, V.102, L.103 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain D Hydrogen bonds: B:K.176, D:L.103 GOL.10: 4 residues within 4Å: Chain A: K.176, V.184 Chain E: D.94, A.98 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.176 GOL.12: 5 residues within 4Å: Chain F: D.94, V.102, L.103 Chain H: K.176, V.184 2 PLIP interactions: 1 interactions with chain H, 1 interactions with chain F Hydrogen bonds: H:K.176, F:L.103 GOL.14: 4 residues within 4Å: Chain E: K.176, V.184 Chain G: D.94, A.98 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:K.176 GOL.16: 5 residues within 4Å: Chain D: K.176, V.184 Chain H: D.94, V.102, L.103 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain H Hydrogen bonds: D:K.176, H:L.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cho, H.J. et al., Substrate-Binding Mechanism of a Type I Extradiol Dioxygenase. J.Biol.Chem. (2010)

Release Date

2010-09-01

Peptides

CATECHOL 2,3-DIOXYGENASE: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
C

D
D

E
C

F
D

G
C

H
D

CATECHOL 2,3-DIOXYGENASE

Related Entries With Identical Sequence