- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x FE: FE (III) ION(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 2 residues within 4Å:- Chain A: P.111, D.155
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:P.111, A:D.155, A:D.155
MG.8: 2 residues within 4Å:- Chain C: P.111, D.155
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:P.111, C:D.155, C:D.155
MG.14: 2 residues within 4Å:- Chain E: P.111, D.155
3 PLIP interactions:3 interactions with chain E- Metal complexes: E:P.111, E:D.155, E:D.155
MG.20: 2 residues within 4Å:- Chain G: P.111, D.155
3 PLIP interactions:3 interactions with chain G- Metal complexes: G:P.111, G:D.155, G:D.155
- 8 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 6 residues within 4Å:- Chain A: G.224, H.227, I.241
- Chain B: I.241, F.283
- Ligands: GOL.4
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:H.227
GOL.4: 7 residues within 4Å:- Chain A: I.241, F.283
- Chain B: G.224, H.227, D.228, I.241
- Ligands: GOL.3
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:G.224
GOL.9: 6 residues within 4Å:- Chain C: G.224, H.227, I.241
- Chain D: I.241, F.283
- Ligands: GOL.10
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:H.227
GOL.10: 7 residues within 4Å:- Chain C: I.241, F.283
- Chain D: G.224, H.227, D.228, I.241
- Ligands: GOL.9
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:G.224
GOL.15: 6 residues within 4Å:- Chain E: G.224, H.227, I.241
- Chain F: I.241, F.283
- Ligands: GOL.16
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:H.227
GOL.16: 7 residues within 4Å:- Chain E: I.241, F.283
- Chain F: G.224, H.227, D.228, I.241
- Ligands: GOL.15
1 PLIP interactions:1 interactions with chain F- Hydrogen bonds: F:G.224
GOL.21: 6 residues within 4Å:- Chain G: G.224, H.227, I.241
- Chain H: I.241, F.283
- Ligands: GOL.22
1 PLIP interactions:1 interactions with chain G- Hydrogen bonds: G:H.227
GOL.22: 7 residues within 4Å:- Chain G: I.241, F.283
- Chain H: G.224, H.227, D.228, I.241
- Ligands: GOL.21
1 PLIP interactions:1 interactions with chain H- Hydrogen bonds: H:G.224
- 4 x MBD: 3-METHYLCATECHOL(Non-covalent)
MBD.6: 9 residues within 4Å:- Chain B: Y.175, F.189, H.197, H.212, H.244, N.246, D.247, Y.253
- Ligands: FE.5
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:Y.175, B:H.244
- Hydrogen bonds: B:H.197, B:N.246
- Water bridges: B:Y.253, B:Y.253
- pi-Stacking: B:H.244
MBD.12: 9 residues within 4Å:- Chain D: Y.175, F.189, H.197, H.212, H.244, N.246, D.247, Y.253
- Ligands: FE.11
7 PLIP interactions:7 interactions with chain D- Hydrophobic interactions: D:Y.175, D:H.244
- Hydrogen bonds: D:H.197, D:N.246
- Water bridges: D:Y.253, D:Y.253
- pi-Stacking: D:H.244
MBD.18: 9 residues within 4Å:- Chain F: Y.175, F.189, H.197, H.212, H.244, N.246, D.247, Y.253
- Ligands: FE.17
7 PLIP interactions:7 interactions with chain F- Hydrophobic interactions: F:Y.175, F:H.244
- Hydrogen bonds: F:H.197, F:N.246
- Water bridges: F:Y.253, F:Y.253
- pi-Stacking: F:H.244
MBD.24: 9 residues within 4Å:- Chain H: Y.175, F.189, H.197, H.212, H.244, N.246, D.247, Y.253
- Ligands: FE.23
7 PLIP interactions:7 interactions with chain H- Hydrophobic interactions: H:Y.175, H:H.244
- Hydrogen bonds: H:H.197, H:N.246
- Water bridges: H:Y.253, H:Y.253
- pi-Stacking: H:H.244
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cho, H.J. et al., Substrate-Binding Mechanism of a Type I Extradiol Dioxygenase. J.Biol.Chem. (2010)
- Release Date
- 2010-09-01
- Peptides
- CATECHOL 2,3-DIOXYGENASE: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
BG
AH
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x FE: FE (III) ION(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 8 x GOL: GLYCEROL(Non-functional Binders)
- 4 x MBD: 3-METHYLCATECHOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cho, H.J. et al., Substrate-Binding Mechanism of a Type I Extradiol Dioxygenase. J.Biol.Chem. (2010)
- Release Date
- 2010-09-01
- Peptides
- CATECHOL 2,3-DIOXYGENASE: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
BG
AH
B