- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x FE: FE (III) ION(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
CA.2: 2 residues within 4Å:- Chain A: P.111, D.155
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:P.111, A:D.155, A:D.155, H2O.48
CA.8: 2 residues within 4Å:- Chain C: P.111, D.155
4 PLIP interactions:3 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:P.111, C:D.155, C:D.155, H2O.187
CA.14: 2 residues within 4Å:- Chain E: P.111, D.155
4 PLIP interactions:3 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: E:P.111, E:D.155, E:D.155, H2O.326
CA.20: 2 residues within 4Å:- Chain G: P.111, D.155
4 PLIP interactions:3 interactions with chain G, 1 Ligand-Water interactions- Metal complexes: G:P.111, G:D.155, G:D.155, H2O.465
- 12 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 6 residues within 4Å:- Chain A: H.227, R.231, V.237, Q.240, I.241, E.288
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.231, A:R.231, A:I.241
- Water bridges: A:I.235
GOL.4: 2 residues within 4Å:- Chain A: D.94
- Chain E: E.158
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.94
GOL.6: 6 residues within 4Å:- Chain B: D.94, A.97, A.98, V.102, L.103
- Chain D: K.176
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.94, B:D.94
GOL.9: 6 residues within 4Å:- Chain C: H.227, R.231, V.237, Q.240, I.241, E.288
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:R.231, C:R.231, C:I.241
- Water bridges: C:I.235
GOL.10: 2 residues within 4Å:- Chain A: E.158
- Chain C: D.94
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:D.94
GOL.12: 6 residues within 4Å:- Chain D: D.94, A.97, A.98, V.102, L.103
- Chain H: K.176
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:D.94, D:D.94
GOL.15: 6 residues within 4Å:- Chain E: H.227, R.231, V.237, Q.240, I.241, E.288
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:R.231, E:R.231, E:I.241
- Water bridges: E:I.235
GOL.16: 2 residues within 4Å:- Chain E: D.94
- Chain G: E.158
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:D.94
GOL.18: 6 residues within 4Å:- Chain B: K.176
- Chain F: D.94, A.97, A.98, V.102, L.103
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:D.94, F:D.94
GOL.21: 6 residues within 4Å:- Chain G: H.227, R.231, V.237, Q.240, I.241, E.288
4 PLIP interactions:4 interactions with chain G- Hydrogen bonds: G:R.231, G:R.231, G:I.241
- Water bridges: G:I.235
GOL.22: 2 residues within 4Å:- Chain C: E.158
- Chain G: D.94
1 PLIP interactions:1 interactions with chain G- Hydrogen bonds: G:D.94
GOL.24: 6 residues within 4Å:- Chain F: K.176
- Chain H: D.94, A.97, A.98, V.102, L.103
2 PLIP interactions:2 interactions with chain H- Hydrogen bonds: H:D.94, H:D.94
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cho, H.J. et al., Substrate-Binding Mechanism of a Type I Extradiol Dioxygenase. J.Biol.Chem. (2010)
- Release Date
- 2010-09-01
- Peptides
- CATECHOL 2,3-DIOXYGENASE: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
BG
AH
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x FE: FE (III) ION(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
- 12 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cho, H.J. et al., Substrate-Binding Mechanism of a Type I Extradiol Dioxygenase. J.Biol.Chem. (2010)
- Release Date
- 2010-09-01
- Peptides
- CATECHOL 2,3-DIOXYGENASE: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
BG
AH
B