SMTL ID : 2xfj.1

Human BACE-1 in complex with N-((1S,2R)-3-(((1S)-2-(cyclohexylamino)- 1-methyl-2-oxoethyl)amino)-2-hydroxy-1-(phenylmethyl)propyl)-3-(ethylamino)-5-(2-oxo-1-pyrrolidinyl)benzamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x VG5: N-[(1S,2R)-1-benzyl-3-{[(1S)-2-(cyclohexylamino)-1-methyl-2-oxoethyl]amino}-2-hydroxypropyl]-3-(ethylamino)-5-(2-oxopyrrolidin-1-yl)benzamide

VG5.1: 25 residues within 4Å: Chain A: G.12, Q.13, G.14, L.31, D.33, G.35, S.36, V.70, P.71, Y.72, T.73, Q.74, F.109, W.116, I.119, I.127, R.129, Y.199, D.229, G.231, T.232, T.233, N.234, R.236, S.326 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:L.31, A:V.70, A:Q.74, A:F.109, A:F.109, A:W.116, A:W.116, A:I.119 Hydrogen bonds: A:G.12, A:D.33, A:G.35, A:T.73, A:T.73, A:Q.74, A:Q.74, A:D.229, A:G.231, A:T.232, A:T.233, A:T.233, A:N.234 pi-Stacking: A:Y.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Clarke, B. et al., Bace-1 Inhibitors Using Novel Edge-to-Face Interaction with Arg-296. Bioorg.Med.Chem.Lett. (2010)

Release Date

2010-07-07

Peptides

BETA-SECRETASE 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BETA-SECRETASE 1

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