- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.69 Å
- Oligo State
- homo-dimer
- Ligands
- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Non-covalent)
PLP.3: 15 residues within 4Å:- Chain A: S.164, G.165, T.166, N.169, Y.192, H.193, G.194, E.240, D.273, V.275, M.276, K.300
- Chain B: G.333, T.334
- Ligands: SFE.4
14 PLIP interactions:10 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:Y.192, A:E.240, A:V.275
- Hydrogen bonds: A:G.165, A:T.166, A:N.169, B:T.334, B:T.334
- Water bridges: A:T.166, A:Y.192, A:G.195, A:E.240, B:N.163, B:N.163
PLP.14: 15 residues within 4Å:- Chain A: G.333, T.334
- Chain B: S.164, G.165, T.166, N.169, Y.192, H.193, G.194, E.240, D.273, V.275, M.276, K.300
- Ligands: SFE.15
11 PLIP interactions:2 interactions with chain A, 9 interactions with chain B- Hydrogen bonds: A:T.334, B:G.165, B:T.166, B:T.166, B:N.169
- Water bridges: A:F.335, B:T.166, B:G.195
- Hydrophobic interactions: B:Y.192, B:E.240, B:V.275
- 2 x SFE: (3S)-3-amino-3-phenylpropanoic acid(Non-covalent)
SFE.4: 12 residues within 4Å:- Chain A: R.74, I.76, Y.109, Y.192, A.245, M.276, K.300, R.432
- Chain B: A.332, G.333, T.334
- Ligands: PLP.3
8 PLIP interactions:7 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:I.76, A:A.245
- Hydrogen bonds: A:K.300, B:G.333
- Salt bridges: A:R.74, A:K.300
- pi-Stacking: A:Y.109, A:Y.192
SFE.15: 12 residues within 4Å:- Chain A: A.332, G.333, T.334
- Chain B: R.74, I.76, Y.109, Y.192, A.245, M.276, K.300, R.432
- Ligands: PLP.14
8 PLIP interactions:7 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:I.76, B:A.245
- Hydrogen bonds: B:K.300, A:G.333
- Salt bridges: B:R.74, B:K.300
- pi-Stacking: B:Y.109, B:Y.192
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.7: 2 residues within 4Å:- Chain A: R.63
- Chain B: E.140
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.63, A:R.63
GOL.9: 6 residues within 4Å:- Chain A: L.144, E.147, A.148, D.151, H.346, T.350
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.147
- Water bridges: A:H.346
GOL.18: 2 residues within 4Å:- Chain A: E.140
- Chain B: R.63
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Water bridges: A:E.140
- Hydrogen bonds: B:R.63, B:R.63
GOL.20: 6 residues within 4Å:- Chain B: L.144, E.147, A.148, D.151, H.346, T.350
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:E.147, B:E.147
- Water bridges: B:H.346
- 2 x BNZ: BENZENE(Non-covalent)
BNZ.10: 5 residues within 4Å:- Chain A: P.241, A.251, A.285, L.289, L.388
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:A.285, A:L.289, A:L.289, A:L.289, A:L.388
BNZ.21: 5 residues within 4Å:- Chain B: P.241, A.251, A.285, L.289, L.388
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:A.285, B:L.289, B:L.289, B:L.289, B:L.388
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wybenga, G.G. et al., Structural Determinants of the Beta-Selectivity of a Bacterial Aminotransferase. J.Biol.Chem. (2012)
- Release Date
- 2012-05-30
- Peptides
- BETA-TRANSAMINASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.69 Å
- Oligo State
- homo-dimer
- Ligands
- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Non-covalent)
- 2 x SFE: (3S)-3-amino-3-phenylpropanoic acid(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 2 x BNZ: BENZENE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wybenga, G.G. et al., Structural Determinants of the Beta-Selectivity of a Bacterial Aminotransferase. J.Biol.Chem. (2012)
- Release Date
- 2012-05-30
- Peptides
- BETA-TRANSAMINASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
C